Difference between revisions of "PWY-6953"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTOCHROME-C-PEROXIDASE-RXN CYTOCHROME-C-PEROXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6953 PWY-6953] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTOCHROME-C-PEROXIDASE-RXN CYTOCHROME-C-PEROXIDASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6953 PWY-6953] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ascorbate_peroxidase
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** dTDP-3-acetamido-α-D-fucose biosynthesis
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** cytochrome-c_peroxidase
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** peroxidase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/1.11.1.5 EC-1.11.1.5]
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* Synonym(s):
 
* Synonym(s):
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** dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''5''' reactions in the full pathway
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** 2 [[Cytochromes-C-Reduced]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''=>''' 2 [[Cytochromes-C-Oxidized]][c] '''+''' 2 [[WATER]][c]
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* [[DTDPGLUCDEHYDRAT-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 2 a reduced c-type cytochrome[c] '''+''' 2 H+[c] '''+''' 1 hydrogen peroxide[c] '''=>''' 2 an oxidized c-type cytochrome[c] '''+''' 2 H2O[c]
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*** [[Tiso_gene_7329]]
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*** [[Tiso_gene_12394]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_11606]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[DTDPGLUCOSEPP-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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* [[Tiso_gene_19683]]
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*** [[Tiso_gene_14704]]
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** IN-SILICO_ANNOTATION
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** 1 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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== Reaction(s) not found ==
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12806 RXN-12806]
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* [[Tiso_gene_11607]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12811 RXN-12811]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12839 RXN-12839]
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***EC-NUMBER
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* [[Tiso_gene_4992]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4990]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5435]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00017 R00017]
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{{#set: common name=dTDP-3-acetamido-α-D-fucose biosynthesis}}
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* UNIPROT:
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{{#set: common name=dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis}}
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** [http://www.uniprot.org/uniprot/P55929 P55929]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/O66533 O66533]
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/Q9RYL1 Q9RYL1]
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{{#set: completion rate=40.0}}
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** [http://www.uniprot.org/uniprot/Q9KVQ2 Q9KVQ2]
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** [http://www.uniprot.org/uniprot/Q9ZJF8 Q9ZJF8]
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** [http://www.uniprot.org/uniprot/O25997 O25997]
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** [http://www.uniprot.org/uniprot/Q9PIE3 Q9PIE3]
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** [http://www.uniprot.org/uniprot/Q9PJ91 Q9PJ91]
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** [http://www.uniprot.org/uniprot/Q8X5N0 Q8X5N0]
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** [http://www.uniprot.org/uniprot/P14532 P14532]
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** [http://www.uniprot.org/uniprot/P00431 P00431]
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** [http://www.uniprot.org/uniprot/P37197 P37197]
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** [http://www.uniprot.org/uniprot/Q51658 Q51658]
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** [http://www.uniprot.org/uniprot/Q50233 Q50233]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ascorbate_peroxidase}}
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{{#set: common name=cytochrome-c_peroxidase}}
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{{#set: common name=peroxidase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.11.1.5}}
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{{#set: gene associated=Tiso_gene_11606|Tiso_gene_19683|Tiso_gene_11607|Tiso_gene_4992|Tiso_gene_4990|Tiso_gene_5435}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:19, 21 March 2018

Pathway PWY-6953

  • taxonomic range:
  • common name:
    • dTDP-3-acetamido-α-D-fucose biosynthesis
  • Synonym(s):
    • dTDP-3-acetamido-3,6-dideoxy-α-D-galactose biosynthesis

Reaction(s) found

2 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6953&oldid=40835"