Difference between revisions of "Tiso gene 9871"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCONOLACT-RXN GLUCONOLACT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** gluconolactonas...")
 
(Created page with "Category:Gene == Gene Tiso_gene_9871 == * right end position: ** 5930 * transcription direction: ** NEGATIVE * left end position: ** 4369 * centisome position: ** 48.53366...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCONOLACT-RXN GLUCONOLACT-RXN] ==
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== Gene Tiso_gene_9871 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5930
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* common name:
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* transcription direction:
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** gluconolactonase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.1.1.17 EC-3.1.1.17]
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** 4369
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* centisome position:
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** 48.53366   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12968]]
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** 1 [[WATER]][c] '''+''' 1 [[GLC-D-LACTONE]][c] '''=>''' 1 [[GLUCONATE]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H2O[c] '''+''' 1 D-glucono-1,5-lactone[c] '''=>''' 1 D-gluconate[c] '''+''' 1 H+[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-12994]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_1947]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_15098]]
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* Reaction: [[RXN-13298]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_1948]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-13299]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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*** Assignment: ec-number
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** '''5''' reactions found over '''9''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7165]], L-ascorbate biosynthesis VI (engineered pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7165 PWY-7165]
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*** Assignment: ec-number
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* Reaction: [[RXN-13300]]
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* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
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** Source: [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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*** Assignment: ec-number
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* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
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** Source: [[annotation-experimental_annotation]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-5530]], sorbitol biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5530 PWY-5530]
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* Reaction: [[RXN-13301]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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* [[DHGLUCONATE-PYR-CAT-PWY]], glucose degradation (oxidative): [http://metacyc.org/META/NEW-IMAGE?object=DHGLUCONATE-PYR-CAT-PWY DHGLUCONATE-PYR-CAT-PWY]
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*** Assignment: ec-number
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* [[annotation]]:
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* Reaction: [[RXN-13443]]
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** [[pathwaytools]]:
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** Source: [[annotation-in-silico_annotation]]
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*** [[in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14484]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14493]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16020]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16095]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16112]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16129]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16154]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17109]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7698]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7053]]
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* [[PWY-5353]]
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* [[PWY-7619]]
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* [[PWY-6433]]
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* [[PWY-7602]]
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* [[PWY-7049]]
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* [[PWY-7601]]
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* [[PWY-7606]]
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* [[PWY-6958]]
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* [[PWY-7728]]
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* [[PWY-6598]]
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* [[PWY-7036]]
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* [[PWY-7592]]
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* [[PWY-5080]]
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* [[PWY-7725]]
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* [[PWY-7724]]
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* [[PWY-7727]]
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* [[PWY-7726]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5930}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10440 10440]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4369}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01519 R01519]
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{{#set: centisome position=48.53366    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-12968|RXN-12994|RXN-13298|RXN-13299|RXN-13300|RXN-13301|RXN-13443|RXN-14484|RXN-14493|RXN-16020|RXN-16095|RXN-16112|RXN-16129|RXN-16154|RXN-17109|RXN-7698}}
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** [http://www.uniprot.org/uniprot/Q01578 Q01578]
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{{#set: pathway associated=PWY-7053|PWY-5353|PWY-7619|PWY-6433|PWY-7602|PWY-7049|PWY-7601|PWY-7606|PWY-6958|PWY-7728|PWY-6598|PWY-7036|PWY-7592|PWY-5080|PWY-7725|PWY-7724|PWY-7727|PWY-7726}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=gluconolactonase}}
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{{#set: ec number=EC-3.1.1.17}}
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{{#set: gene associated=Tiso_gene_1947|Tiso_gene_15098|Tiso_gene_1948}}
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{{#set: in pathway=PWY-2221|PWY-7165|NPGLUCAT-PWY|GLUCOSE1PMETAB-PWY|PWY-5530|DHGLUCONATE-PYR-CAT-PWY}}
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−
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:14, 21 March 2018

Gene Tiso_gene_9871

  • right end position:
    • 5930
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 4369
  • centisome position:
    • 48.53366
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9871&oldid=40369"