Difference between revisions of "PWY-5384"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_diphosp...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPKIN-RXN GDPKIN-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
−
** ORF
+
** sucrose degradation IV (sucrose phosphorylase)
−
** nucleoside_diphosphate_kinase
+
−
** adenylate_kinase_domain-containing_protein_1
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''4''' reactions in the full pathway
−
** 1 [[ATP]][c] '''+''' 1 [[GDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[GTP]][c]
+
* [[FRUCTOKINASE-RXN]]
−
* With common name(s):
+
** 3 associated gene(s):
−
** 1 ATP[c] '''+''' 1 GDP[c] '''=>''' 1 ADP[c] '''+''' 1 GTP[c]
+
*** [[Tiso_gene_1303]]
−
 
+
*** [[Tiso_gene_17974]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_3107]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 4 reconstruction source(s) associated:
−
* [[Tiso_gene_16529]]
+
*** [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-athaliana]]
−
***EC-NUMBER
+
*** [[orthology-creinhardtii]]
−
** EXPERIMENTAL_ANNOTATION
+
*** [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
* [[PGLUCISOM-RXN]]
−
** [[pantograph]]-[[athaliana]]
+
** 1 associated gene(s):
−
** [[pantograph]]-[[synechocystis]]
+
*** [[Tiso_gene_19480]]
−
** [[pantograph]]-[[esiliculosus]]
+
** 3 reconstruction source(s) associated:
−
** [[pantograph]]-[[creinhardtii]]
+
*** [[annotation-experimental_annotation]]
−
* [[Tiso_gene_17272]]
+
*** [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* [[PHOSPHOGLUCMUT-RXN]]
−
* [[Tiso_gene_18224]]
+
** 2 associated gene(s):
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_4816]]
−
***EC-NUMBER
+
*** [[Tiso_gene_13477]]
−
* [[Tiso_gene_9290]]
+
** 3 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** [[manual-primary_network]]
−
* [[Tiso_gene_195]]
+
*** [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
== Reaction(s) not found ==
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=SUCROSE-PHOSPHORYLASE-RXN SUCROSE-PHOSPHORYLASE-RXN]
−
* [[Tiso_gene_17271]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
*** [[synechocystis]]
+
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-201174}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27686 27686]
+
{{#set: common name=sucrose degradation IV (sucrose phosphorylase)}}
−
* LIGAND-RXN:
+
{{#set: reaction found=3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00330 R00330]
+
{{#set: total reaction=4}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: completion rate=75.0}}
−
{{#set: common name=ORF}}
+
−
{{#set: common name=nucleoside_diphosphate_kinase}}
+
−
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
+
−
{{#set: ec number=EC-2.7.4.6}}
+
−
{{#set: gene associated=Tiso_gene_16529|Tiso_gene_17272|Tiso_gene_18224|Tiso_gene_9290|Tiso_gene_195|Tiso_gene_17271}}
+
−
{{#set: in pathway=PWY-7221|PPGPPMET-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:19, 21 March 2018

Pathway PWY-5384

  • taxonomic range:
  • common name:
    • sucrose degradation IV (sucrose phosphorylase)
  • Synonym(s):

Reaction(s) found

3 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5384&oldid=40867"