Difference between revisions of "PWY-1622"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17779 RXN-17779] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17779 RXN-17779] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** Acyl-CoA dehydrogenase
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** formaldehyde assimilation I (serine pathway)
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** acyl-_dehydrogenase
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** acyl-CoA_dehydrogenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''13''' reactions in the full pathway
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** 1 [[ETF-Oxidized]][c] '''+''' 1 [[CPD-19144]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-19170]][c] '''+''' 1 [[ETF-Reduced]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 (7Z)-hexadecenoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 (2E,7Z)-hexadecenoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_6475]]
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** 7 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_16113]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_5449]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***AUTOMATED-NAME-MATCH
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* [[GLYOHMETRANS-RXN]]
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* [[Tiso_gene_8271]]
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** 4 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16153]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_7776]]
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* [[Tiso_gene_8272]]
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*** [[Tiso_gene_18652]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16154]]
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***AUTOMATED-NAME-MATCH
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** 4 reconstruction source(s) associated:
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* [[Tiso_gene_16631]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
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***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* [[MALATE-DEH-RXN]]
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* [[annotation]]:
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** 2 associated gene(s):
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** [[pathwaytools]]:
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*** [[Tiso_gene_2323]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN-15513]]
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** 8 associated gene(s):
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*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_9923]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-2881]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYPYRUVATE-REDUCTASE-RXN HYDROXYPYRUVATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE--COA-LIGASE-RXN MALATE--COA-LIGASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2802 RXN-2802]
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* [http://metacyc.org/META/NEW-IMAGE?object=SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=Acyl-CoA dehydrogenase}}
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{{#set: common name=formaldehyde assimilation I (serine pathway)}}
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{{#set: common name=acyl-_dehydrogenase}}
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{{#set: reaction found=5}}
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{{#set: common name=acyl-CoA_dehydrogenase}}
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{{#set: total reaction=13}}
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{{#set: ec number=EC-1.3.8}}
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{{#set: completion rate=38.0}}
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{{#set: gene associated=Tiso_gene_6475|Tiso_gene_16113|Tiso_gene_5449|Tiso_gene_8271|Tiso_gene_8272|Tiso_gene_16631}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:20, 21 March 2018

Pathway PWY-1622

  • taxonomic range:
  • common name:
    • formaldehyde assimilation I (serine pathway)
  • Synonym(s):

Reaction(s) found

5 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-1622&oldid=40954"