Difference between revisions of "RETINYL-PALMITATE-ESTERASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OXYGEN-MOLECULE OXYGEN-MOLECULE] == * smiles: ** O=O * inchi key: ** InChIKey=MYMOFIZGZYHOMD-UH...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RETINYL-PALMITATE-ESTERASE-RXN RETINYL-PALMITATE-ESTERASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
(2 intermediate revisions by the same user not shown)
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−
[[Category:Metabolite]]
+
[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=OXYGEN-MOLECULE OXYGEN-MOLECULE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RETINYL-PALMITATE-ESTERASE-RXN RETINYL-PALMITATE-ESTERASE-RXN] ==
−
* smiles:
+
* direction:
−
** O=O
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=MYMOFIZGZYHOMD-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** oxygen
+
** retinyl-palmitate esterase
−
* molecular weight:
+
** ORF
−
** 31.999   
+
** serine_esterase
 +
** sialate_o-acetylesterase-like_protein
 +
** lysophospholipase
 +
** alpha_beta_hydrolase
 +
** alpha_beta_hydrolase_fold_protein
 +
** protein_chloroplastic
 +
** para-nitrobenzyl_esterase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
−
** oxygen molecule
+
** retinyl palmitate hydrolase
 +
** retinyl palmitate hydrolyase
 +
** retinyl ester hydrolase
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-11519]]
+
* With identifiers:
−
* [[RXN-13398]]
+
** 1 [[CHOCOLA_A]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PALMITATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Retinols]][c]
−
* [[OBFOOLor]]
+
* With common name(s):
−
* [[RXN-8026]]
+
** 1 all-trans-retinyl palmitate[c] '''+''' 1 H2O[c] '''=>''' 1 palmitate[c] '''+''' 1 H+[c] '''+''' 1 a retinol[c]
−
* [[RXN-8025]]
+
 
−
* [[RXN0-1461]]
+
== Genes associated with this reaction  ==
−
* [[RXN-7580]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-715]]
+
* Gene: [[Tiso_gene_4650]]
−
* [[RXN-716]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-13061]]
+
*** Assignment: EC-NUMBER
−
* [[L-ASPARTATE-OXID-RXN]]
+
** Source: [[orthology-esiliculosus]]
−
* [[RXN-13064]]
+
* Gene: [[Tiso_gene_10066]]
−
* [[1.14.13.70-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN1F-167]]
+
*** Assignment: EC-NUMBER
−
* [[RXN-15684]]
+
* Gene: [[Tiso_gene_4606]]
−
* [[1.13.11.6-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-4225]]
+
*** Assignment: EC-NUMBER
−
* [[RXN-171]]
+
* Gene: [[Tiso_gene_1538]]
−
* [[RXN-7677]]
+
** Source: [[orthology-esiliculosus]]
−
* [[RXN66-12]]
+
* Gene: [[Tiso_gene_19778]]
−
* [[1.14.11.2-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-7676]]
+
*** Assignment: EC-NUMBER
−
* [[RXN-7903]]
+
* Gene: [[Tiso_gene_11351]]
−
* [[LEUCPEL-RXN]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[RXN-11680]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[AMINEOXID-RXN]]
+
* Gene: [[Tiso_gene_1922]]
−
* [[RXN-11521]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-11520]]
+
*** Assignment: EC-NUMBER
−
* [[RXN66-11]]
+
* Gene: [[Tiso_gene_9429]]
−
* [[1.14.13.78-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[1.14.11.19-RXN]]
+
*** Assignment: EC-NUMBER
−
* [[RXN6666-4]]
+
* Gene: [[Tiso_gene_2556]]
−
* [[RXN66-81]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-8389]]
+
*** Assignment: EC-NUMBER
−
* [[RXN66-146]]
+
* Gene: [[Tiso_gene_12686]]
−
* [[RXN-11057]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-11056]]
+
*** Assignment: EC-NUMBER
−
* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
+
* Gene: [[Tiso_gene_16518]]
−
* [[RXN-13707]]
+
** Source: [[orthology-esiliculosus]]
−
* [[RXN-3661]]
+
* Gene: [[Tiso_gene_1537]]
−
* [[RXN-11535]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN0-5265]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[RXN-7648]]
+
** Source: [[orthology-esiliculosus]]
−
* [[RXN-17113]]
+
* Gene: [[Tiso_gene_17029]]
−
* [[RXN-16101]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RXN-7973]]
+
*** Assignment: EC-NUMBER
−
* [[RXN-7974]]
+
== Pathways  ==
−
* [[NODOy]]
+
== Reconstruction information  ==
−
* [[NODOx]]
+
* Category: [[orthology]]
−
* [[R96]]
+
** Source: [[orthology-esiliculosus]]
−
* [[RXN-15830]]
+
*** Tool: [[pantograph]]
−
* [[R95]]
+
* Category: [[annotation]]
−
* [[CYSTEINE-DIOXYGENASE-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[1.1.3.37-RXN]]
+
*** Tool: [[pathwaytools]]
−
* [[RXN-12541]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[RXN-5861]]
+
*** Tool: [[pathwaytools]]
−
* [[RXN-5961]]
+
−
* [[RXN-5962]]
+
−
* [[RXN-4241]]
+
−
* [[RXN1F-163]]
+
−
* [[RXN-14796]]
+
−
* [[RXN-5282]]
+
−
* [[RXN-5283]]
+
−
* [[RXN-5284]]
+
−
* [[LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN]]
+
−
* [[ACYL-COA-OXIDASE-RXN]]
+
−
* [[RXN-10815]]
+
−
* [[THIOL-OXIDASE-RXN]]
+
−
* [[PNPOXI-RXN]]
+
−
* [[RXN-8872]]
+
−
* [[RXN-11784]]
+
−
* [[RXN-6381]]
+
−
* [[RXN66-305]]
+
−
* [[RXN-7775]]
+
−
* [[KYNURENINE-3-MONOOXYGENASE-RXN]]
+
−
* [[RXN-11989]]
+
−
* [[CYCLOHEXANONE-MONOOXYGENASE-RXN]]
+
−
* [[RXN-8346]]
+
−
* [[MONOPHENOL-MONOOXYGENASE-RXN]]
+
−
* [[RXN-1121]]
+
−
* [[1.14.13.79-RXN]]
+
−
* [[1.1.3.41-RXN]]
+
−
* [[RXN3O-218]]
+
−
* [[HPPD]]
+
−
* [[R07562]]
+
−
* [[RXN-11881]]
+
−
* [[RXN-113]]
+
−
* [[1.14.21.6-RXN]]
+
−
* [[RXN-115]]
+
−
* [[RXN-11026]]
+
−
* [[RXN66-26]]
+
−
* [[AMACETOXID-RXN]]
+
−
* [[RXN-698]]
+
−
* [[1.21.3.1-RXN]]
+
−
* [[RXN-7785]]
+
−
* [[UNSPECIFIC-MONOOXYGENASE-RXN]]
+
−
* [[RXN-7651]]
+
−
* [[1.8.3.5-RXN]]
+
−
* [[NARINGENIN-3-DIOXYGENASE-RXN]]
+
−
* [[RXN-8350]]
+
−
* [[HEME-OXYGENASE-DECYCLIZING-RXN]]
+
−
* [[RXN-16099]]
+
−
* [[1.14.13.8-RXN]]
+
−
* [[TRANS-CINNAMATE-4-MONOOXYGENASE-RXN]]
+
−
* [[CYTOCHROME-C-OXIDASE-RXN]]
+
−
* [[RXN-14775]]
+
−
* [[1.14.19.3-RXN]]
+
−
* [[RXN-14771]]
+
−
* [[RXN-602]]
+
−
* [[HOMOGENTISATE-12-DIOXYGENASE-RXN]]
+
−
* [[RXN3O-130]]
+
−
* [[RXN66-13]]
+
−
* [[RXN-10706]]
+
−
* [[RXN-10707]]
+
−
* [[CYSTEAMINE-DIOXYGENASE-RXN]]
+
−
* [[RXN66-304]]
+
−
* [[PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN]]
+
−
* [[RXN-5821]]
+
−
* [[RXN-14789]]
+
−
* [[RXN1F-93]]
+
−
* [[RXN-13193]]
+
−
* [[RXN66-169]]
+
−
* [[RXN-12510]]
+
−
* [[RXN-6550]]
+
−
* [[1.14.11.18-RXN]]
+
−
* [[RXN66-161]]
+
−
* [[RXN-14785]]
+
−
* [[RXN66-163]]
+
−
* [[RXN-12518]]
+
−
* [[HGDO]]
+
−
* [[ARGININE-2-MONOOXYGENASE-RXN]]
+
−
* [[RXN-13961]]
+
−
* [[RXN0-299]]
+
−
* [[RXN-12869]]
+
−
* [[PPPGO]]
+
−
* [[PROTOPORGENOXI-RXN]]
+
−
* [[RXN-7978]]
+
−
* [[RXN-774]]
+
−
* [[RXN-16226]]
+
−
* [[RXN-773]]
+
−
* [[RXN66-303]]
+
−
* [[RXN-7979]]
+
−
* [[PEPTIDYLGLYCINE-MONOOXYGENASE-RXN]]
+
−
* [[RXN-778]]
+
−
* [[RXN-527]]
+
−
* [[DEOXYHYPUSINE-MONOOXYGENASE-RXN]]
+
−
* [[RXN-12776]]
+
−
* [[TransportSeed_OXYGEN-MOLECULE]]
+
−
* [[RXN-4209]]
+
−
* [[RXN-14576]]
+
−
* [[RXN-8450]]
+
−
* [[RXN-12669]]
+
−
* [[RXN1F-168]]
+
−
* [[RXN-6883]]
+
−
* [[PMPOXI-RXN]]
+
−
* [[RXN1F-169]]
+
−
* [[RXN-10696]]
+
−
* [[RXN66-470]]
+
−
* [[RXN-16332]]
+
−
* [[XANTHINE-OXIDASE-RXN]]
+
−
* [[RXN-7922]]
+
−
* [[RXN-1321]]
+
−
* [[RXN-5242]]
+
−
* [[RXN1F-165]]
+
−
* [[RXN-16132]]
+
−
* [[RXN-16134]]
+
−
* [[RXN66-181]]
+
−
* [[RXN490-3641]]
+
−
* [[RXN-9926]]
+
−
* [[RXN-9597]]
+
−
* [[RXN-8630]]
+
−
* [[AMINEPHEN-RXN]]
+
−
* [[1.4.3.19-RXN]]
+
−
* [[R00357]]
+
−
* [[RXN-9600]]
+
−
* [[RXN-13374]]
+
−
* [[RXN1F-162]]
+
−
* [[ANXANor]]
+
−
* [[RXN-9843]]
+
−
* [[RXN-4230]]
+
−
* [[RXN-4231]]
+
−
* [[RXN1F-160]]
+
−
* [[RXN1F-161]]
+
−
* [[RXN-9844]]
+
−
* [[1.14.19.1-RXN]]
+
−
== Reaction(s) known to produce the compound ==
+
−
* [[RXN-15448]]
+
−
* [[CATAL-RXN]]
+
−
* [[SUPEROX-DISMUT-RXN]]
+
−
* [[PSII-RXN]]
+
−
* [[TransportSeed_OXYGEN-MOLECULE]]
+
−
== Reaction(s) of unknown directionality ==
+
−
* [[ExchangeSeed_OXYGEN-MOLECULE]]
+
−
* [[R371]]
+
 
== External links  ==
 
== External links  ==
−
* CAS : 7782-44-7
+
* RHEA:
−
* METABOLIGHTS : MTBLC15379
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21508 21508]
−
* PUBCHEM:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=977 977]
+
{{#set: common name=retinyl-palmitate esterase}}
−
* HMDB : HMDB01377
+
{{#set: common name=ORF}}
−
* LIGAND-CPD:
+
{{#set: common name=serine_esterase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00007 C00007]
+
{{#set: common name=sialate_o-acetylesterase-like_protein}}
−
* CHEMSPIDER:
+
{{#set: common name=lysophospholipase}}
−
** [http://www.chemspider.com/Chemical-Structure.952.html 952]
+
{{#set: common name=alpha_beta_hydrolase}}
−
* CHEBI:
+
{{#set: common name=alpha_beta_hydrolase_fold_protein}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15379 15379]
+
{{#set: common name=protein_chloroplastic}}
−
* BIGG : o2
+
{{#set: common name=para-nitrobenzyl_esterase}}
−
{{#set: smiles=O=O}}
+
{{#set: ec number=EC-3.1.1.1}}
−
{{#set: inchi key=InChIKey=MYMOFIZGZYHOMD-UHFFFAOYSA-N}}
+
{{#set: common name=retinyl palmitate hydrolase|retinyl palmitate hydrolyase|retinyl ester hydrolase}}
−
{{#set: common name=oxygen}}
+
{{#set: gene associated=Tiso_gene_4650|Tiso_gene_10066|Tiso_gene_4606|Tiso_gene_1538|Tiso_gene_19778|Tiso_gene_11351|Tiso_gene_1922|Tiso_gene_9429|Tiso_gene_2556|Tiso_gene_12686|Tiso_gene_16518|Tiso_gene_1537|Tiso_gene_17029}}
−
{{#set: molecular weight=31.999    }}
+
{{#set: in pathway=}}
−
{{#set: common name=oxygen molecule}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: consumed by=RXN-11519|RXN-13398|OBFOOLor|RXN-8026|RXN-8025|RXN0-1461|RXN-7580|RXN-715|RXN-716|RXN-13061|L-ASPARTATE-OXID-RXN|RXN-13064|1.14.13.70-RXN|RXN1F-167|RXN-15684|1.13.11.6-RXN|RXN-4225|RXN-171|RXN-7677|RXN66-12|1.14.11.2-RXN|RXN-7676|RXN-7903|LEUCPEL-RXN|RXN-11680|AMINEOXID-RXN|RXN-11521|RXN-11520|RXN66-11|1.14.13.78-RXN|1.14.11.19-RXN|RXN6666-4|RXN66-81|RXN-8389|RXN66-146|RXN-11057|RXN-11056|4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN|RXN-13707|RXN-3661|RXN-11535|RXN0-5265|RXN-7648|RXN-17113|RXN-16101|RXN-7973|RXN-7974|NODOy|NODOx|R96|RXN-15830|R95|CYSTEINE-DIOXYGENASE-RXN|1.1.3.37-RXN|RXN-12541|RXN-5861|RXN-5961|RXN-5962|RXN-4241|RXN1F-163|RXN-14796|RXN-5282|RXN-5283|RXN-5284|LIGNOSTILBENE-ALPHA-BETA-DIOXYGENASE-RXN|ACYL-COA-OXIDASE-RXN|RXN-10815|THIOL-OXIDASE-RXN|PNPOXI-RXN|RXN-8872|RXN-11784|RXN-6381|RXN66-305|RXN-7775|KYNURENINE-3-MONOOXYGENASE-RXN|RXN-11989|CYCLOHEXANONE-MONOOXYGENASE-RXN|RXN-8346|MONOPHENOL-MONOOXYGENASE-RXN|RXN-1121|1.14.13.79-RXN|1.1.3.41-RXN|RXN3O-218|HPPD|R07562|RXN-11881|RXN-113|1.14.21.6-RXN|RXN-115|RXN-11026|RXN66-26|AMACETOXID-RXN|RXN-698|1.21.3.1-RXN|RXN-7785|UNSPECIFIC-MONOOXYGENASE-RXN|RXN-7651|1.8.3.5-RXN|NARINGENIN-3-DIOXYGENASE-RXN|RXN-8350|HEME-OXYGENASE-DECYCLIZING-RXN|RXN-16099|1.14.13.8-RXN|TRANS-CINNAMATE-4-MONOOXYGENASE-RXN|CYTOCHROME-C-OXIDASE-RXN|RXN-14775|1.14.19.3-RXN|RXN-14771|RXN-602|HOMOGENTISATE-12-DIOXYGENASE-RXN|RXN3O-130|RXN66-13|RXN-10706|RXN-10707|CYSTEAMINE-DIOXYGENASE-RXN|RXN66-304|PEPTIDE-ASPARTATE-BETA-DIOXYGENASE-RXN|RXN-5821|RXN-14789|RXN1F-93|RXN-13193|RXN66-169|RXN-12510|RXN-6550|1.14.11.18-RXN|RXN66-161|RXN-14785|RXN66-163|RXN-12518|HGDO|ARGININE-2-MONOOXYGENASE-RXN|RXN-13961|RXN0-299|RXN-12869|PPPGO|PROTOPORGENOXI-RXN|RXN-7978|RXN-774|RXN-16226|RXN-773|RXN66-303|RXN-7979|PEPTIDYLGLYCINE-MONOOXYGENASE-RXN|RXN-778|RXN-527|DEOXYHYPUSINE-MONOOXYGENASE-RXN|RXN-12776|TransportSeed_OXYGEN-MOLECULE|RXN-4209|RXN-14576|RXN-8450|RXN-12669|RXN1F-168|RXN-6883|PMPOXI-RXN|RXN1F-169|RXN-10696|RXN66-470|RXN-16332|XANTHINE-OXIDASE-RXN|RXN-7922|RXN-1321|RXN-5242|RXN1F-165|RXN-16132|RXN-16134|RXN66-181|RXN490-3641|RXN-9926|RXN-9597|RXN-8630|AMINEPHEN-RXN|1.4.3.19-RXN|R00357|RXN-9600|RXN-13374|RXN1F-162|ANXANor|RXN-9843|RXN-4230|RXN-4231|RXN1F-160|RXN1F-161|RXN-9844|1.14.19.1-RXN}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: produced by=RXN-15448|CATAL-RXN|SUPEROX-DISMUT-RXN|PSII-RXN|TransportSeed_OXYGEN-MOLECULE}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: consumed or produced by=ExchangeSeed_OXYGEN-MOLECULE|R371}}
+

Latest revision as of 19:20, 21 March 2018

Reaction RETINYL-PALMITATE-ESTERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • retinyl-palmitate esterase
    • ORF
    • serine_esterase
    • sialate_o-acetylesterase-like_protein
    • lysophospholipase
    • alpha_beta_hydrolase
    • alpha_beta_hydrolase_fold_protein
    • protein_chloroplastic
    • para-nitrobenzyl_esterase
  • ec number:
  • Synonym(s):
    • retinyl palmitate hydrolase
    • retinyl palmitate hydrolyase
    • retinyl ester hydrolase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-retinyl palmitate[c] + 1 H2O[c] => 1 palmitate[c] + 1 H+[c] + 1 a retinol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links









Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RETINYL-PALMITATE-ESTERASE-RXN&oldid=40964"