Difference between revisions of "SERDEG-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TA...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://enzyme.expasy.org/EC/2.5.1.31 EC-2.5.1.31]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
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** L-serine degradation
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''3''' reactions in the full pathway
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** 1 [[FARNESYL-PP]][c] '''+''' 8 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 8 [[PPI]][c] '''+''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c]
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* [[RXN-15124]]
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* With common name(s):
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** 0 associated gene:
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** 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 8 isopentenyl diphosphate[c] '''=>''' 8 diphosphate[c] '''+''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15127]]
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* [[Tiso_gene_8531]]
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** 0 associated gene:
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** [[pantograph]]-[[athaliana]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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== Reaction(s) not found ==
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* [[PWY-5785]], di-trans,poly-cis-undecaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5785 PWY-5785]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27551 27551]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=SERDEG-PWY SERDEG-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06447 R06447]
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{{#set: taxonomic range=TAX-33208}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07269 R07269]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: common name=L-serine degradation}}
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** [http://www.uniprot.org/uniprot/O82827 O82827]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/O43091 O43091]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/Q9JX35 Q9JX35]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/O67291 O67291]
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** [http://www.uniprot.org/uniprot/Q9X1B8 Q9X1B8]
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** [http://www.uniprot.org/uniprot/O34559 O34559]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.5.1.31}}
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{{#set: gene associated=Tiso_gene_8531}}
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{{#set: in pathway=PWY-5785}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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Latest revision as of 19:21, 21 March 2018

Pathway SERDEG-PWY

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




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