Difference between revisions of "SERINE-C-PALMITOYLTRANSFERASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATE_NUCLEOTIDE NICOTINATE_NUCLEOTIDE] == * smiles: ** C(OP([O-])(=O)[O-])C1(C(O)C(O)C(O1...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATE_NUCLEOTIDE NICOTINATE_NUCLEOTIDE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
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* smiles:
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* direction:
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** C(OP([O-])(=O)[O-])C1(C(O)C(O)C(O1)[N+]2(C=CC=C(C(=O)[O-])C=2))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=JOUIQRNQJGXQDC-ZYUZMQFOSA-L
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* common name:
 
* common name:
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** β-nicotinate D-ribonucleotide
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** serine_palmitoyltransferase
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* molecular weight:
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* ec number:
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** 333.191   
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** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
 
* Synonym(s):
 
* Synonym(s):
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** nicotinate dinucleotide
 
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** β-nicotinate-D-nucleotide
 
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** NaMN
 
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** nicotinic acid nucleotide
 
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** nicotinic acid mononucleotide
 
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** nicotinic acid ribonucleotide
 
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** nicotinate-D-ribonucleotide
 
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** nicotinate ribonucleotide
 
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** nicotinate nucleotide
 
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** deamido-nicotinamide mononucleotide
 
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** deamido-NMN
 
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** nicotinate D-ribonucleotide
 
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** nicotinate mononucleotide
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[NICONUCADENYLYLTRAN-RXN]]
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* With identifiers:
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* [[RXN-14227]]
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** 1 [[SER]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CO-A]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-8443]]
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** 1 L-serine[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 coenzyme A[c]
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* [[DNNH]]
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* [[QUINOPRIBOTRANS-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[NRPH]]
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* Gene: [[Tiso_gene_10992]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 321-02-8
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* RHEA:
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* METABOLIGHTS : MTBLC57502
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46878382 46878382]
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** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
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* HMDB : HMDB01132
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P25045 P25045]
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** [http://www.genome.jp/dbget-bin/www_bget?C01185 C01185]
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** [http://www.uniprot.org/uniprot/O15270 O15270]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P48241 P48241]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57502 57502]
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** [http://www.uniprot.org/uniprot/Q09925 Q09925]
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* BIGG : nicrnt
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** [http://www.uniprot.org/uniprot/P40970 P40970]
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{{#set: smiles=C(OP([O-])(=O)[O-])C1(C(O)C(O)C(O1)[N+]2(C=CC=C(C(=O)[O-])C=2))}}
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** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
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{{#set: inchi key=InChIKey=JOUIQRNQJGXQDC-ZYUZMQFOSA-L}}
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** [http://www.uniprot.org/uniprot/Q20375 Q20375]
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{{#set: common name=β-nicotinate D-ribonucleotide}}
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** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
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{{#set: molecular weight=333.191    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=nicotinate dinucleotide|β-nicotinate-D-nucleotide|NaMN|nicotinic acid nucleotide|nicotinic acid mononucleotide|nicotinic acid ribonucleotide|nicotinate-D-ribonucleotide|nicotinate ribonucleotide|nicotinate nucleotide|deamido-nicotinamide mononucleotide|deamido-NMN|nicotinate D-ribonucleotide|nicotinate mononucleotide}}
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{{#set: common name=serine_palmitoyltransferase}}
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{{#set: consumed by=NICONUCADENYLYLTRAN-RXN|RXN-14227}}
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{{#set: ec number=EC-2.3.1.50}}
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{{#set: produced by=RXN-8443|DNNH|QUINOPRIBOTRANS-RXN}}
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{{#set: gene associated=Tiso_gene_10992}}
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{{#set: consumed or produced by=NRPH}}
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{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:05, 21 March 2018

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • serine_palmitoyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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