Difference between revisions of "SERINE-C-PALMITOYLTRANSFERASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATE_NUCLEOTIDE NICOTINATE_NUCLEOTIDE] == * smiles: ** C(OP([O-])(=O)[O-])C1(C(O)C(O)C(O1...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=NICOTINATE_NUCLEOTIDE NICOTINATE_NUCLEOTIDE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
−
* smiles:
+
* direction:
−
** C(OP([O-])(=O)[O-])C1(C(O)C(O)C(O1)[N+]2(C=CC=C(C(=O)[O-])C=2))
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=JOUIQRNQJGXQDC-ZYUZMQFOSA-L
+
 
* common name:
 
* common name:
−
** β-nicotinate D-ribonucleotide
+
** serine_palmitoyltransferase
−
* molecular weight:
+
* ec number:
−
** 333.191   
+
** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
 
* Synonym(s):
 
* Synonym(s):
−
** nicotinate dinucleotide
 
−
** β-nicotinate-D-nucleotide
 
−
** NaMN
 
−
** nicotinic acid nucleotide
 
−
** nicotinic acid mononucleotide
 
−
** nicotinic acid ribonucleotide
 
−
** nicotinate-D-ribonucleotide
 
−
** nicotinate ribonucleotide
 
−
** nicotinate nucleotide
 
−
** deamido-nicotinamide mononucleotide
 
−
** deamido-NMN
 
−
** nicotinate D-ribonucleotide
 
−
** nicotinate mononucleotide
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[NICONUCADENYLYLTRAN-RXN]]
+
* With identifiers:
−
* [[RXN-14227]]
+
** 1 [[SER]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CO-A]][c]
−
== Reaction(s) known to produce the compound ==
+
* With common name(s):
−
* [[RXN-8443]]
+
** 1 L-serine[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 coenzyme A[c]
−
* [[DNNH]]
+
 
−
* [[QUINOPRIBOTRANS-RXN]]
+
== Genes associated with this reaction  ==
−
== Reaction(s) of unknown directionality ==
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[NRPH]]
+
* Gene: [[Tiso_gene_10992]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 321-02-8
+
* RHEA:
−
* METABOLIGHTS : MTBLC57502
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46878382 46878382]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
−
* HMDB : HMDB01132
+
* UNIPROT:
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/P25045 P25045]
−
** [http://www.genome.jp/dbget-bin/www_bget?C01185 C01185]
+
** [http://www.uniprot.org/uniprot/O15270 O15270]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P48241 P48241]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57502 57502]
+
** [http://www.uniprot.org/uniprot/Q09925 Q09925]
−
* BIGG : nicrnt
+
** [http://www.uniprot.org/uniprot/P40970 P40970]
−
{{#set: smiles=C(OP([O-])(=O)[O-])C1(C(O)C(O)C(O1)[N+]2(C=CC=C(C(=O)[O-])C=2))}}
+
** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
−
{{#set: inchi key=InChIKey=JOUIQRNQJGXQDC-ZYUZMQFOSA-L}}
+
** [http://www.uniprot.org/uniprot/Q20375 Q20375]
−
{{#set: common name=β-nicotinate D-ribonucleotide}}
+
** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
−
{{#set: molecular weight=333.191    }}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=nicotinate dinucleotide|β-nicotinate-D-nucleotide|NaMN|nicotinic acid nucleotide|nicotinic acid mononucleotide|nicotinic acid ribonucleotide|nicotinate-D-ribonucleotide|nicotinate ribonucleotide|nicotinate nucleotide|deamido-nicotinamide mononucleotide|deamido-NMN|nicotinate D-ribonucleotide|nicotinate mononucleotide}}
+
{{#set: common name=serine_palmitoyltransferase}}
−
{{#set: consumed by=NICONUCADENYLYLTRAN-RXN|RXN-14227}}
+
{{#set: ec number=EC-2.3.1.50}}
−
{{#set: produced by=RXN-8443|DNNH|QUINOPRIBOTRANS-RXN}}
+
{{#set: gene associated=Tiso_gene_10992}}
−
{{#set: consumed or produced by=NRPH}}
+
{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:05, 21 March 2018

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • serine_palmitoyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SERINE-C-PALMITOYLTRANSFERASE-RXN&oldid=39373"