Difference between revisions of "Tiso gene 4493"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7978 RXN-7978] == * direction: ** LEFT-TO-RIGHT * common name: ** zeaxanthin_epoxidase * Synony...")
(Created page with "Category:Gene == Gene Tiso_gene_4493 == * right end position: ** 13169 * transcription direction: ** POSITIVE * left end position: ** 11810 * centisome position: ** 79.835...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7978 RXN-7978] ==
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== Gene Tiso_gene_4493 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 13169
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* common name:
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* transcription direction:
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** zeaxanthin_epoxidase
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** POSITIVE
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* left end position:
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** 11810
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* centisome position:
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** 79.83506   
 
* Synonym(s):
 
* Synonym(s):
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** Zea-epoxidase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-13037]]
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** 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-130]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[CPD1F-131]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 oxygen[c] '''+''' 1 zeaxanthin[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 antheraxanthin[c] '''+''' 1 H2O[c]
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* Reaction: [[RXN-13039]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-17127]]
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* [[Tiso_gene_6386]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-8654]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: automated-name-match
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* [[Tiso_gene_10919]]
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* Reaction: [[RXN-8655]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN0-1141]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
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*** Assignment: automated-name-match
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[RXN0-5098]]
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== Reconstruction information  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[orthology]]:
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*** Assignment: automated-name-match
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** [[pantograph]]:
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* Reaction: [[RXN0-947]]
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*** [[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[annotation]]:
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*** Assignment: ec-number
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** [[pathwaytools]]:
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== Pathways associated ==
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*** [[experimental_annotation]]
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* [[PWY-7382]]
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*** [[in-silico_annotation]]
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* [[PWY0-1275]]
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* [[PWY-6987]]
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* [[PWY-6984]]
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* [[PWY0-522]]
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* [[PWY0-501]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=13169}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07199 R07199]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=11810}}
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{{#set: common name=zeaxanthin_epoxidase}}
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{{#set: centisome position=79.83506    }}
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{{#set: common name=Zea-epoxidase}}
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{{#set: reaction associated=RXN-13037|RXN-13039|RXN-17127|RXN-8654|RXN-8655|RXN0-1141|RXN0-5098|RXN0-947}}
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{{#set: gene associated=Tiso_gene_6386|Tiso_gene_10919}}
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{{#set: pathway associated=PWY-7382|PWY0-1275|PWY-6987|PWY-6984|PWY0-522|PWY0-501}}
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{{#set: in pathway=PWY-5945}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:21, 21 March 2018

Gene Tiso_gene_4493

  • right end position:
    • 13169
  • transcription direction:
    • POSITIVE
  • left end position:
    • 11810
  • centisome position:
    • 79.83506
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4493&oldid=41116"