Difference between revisions of "1CMET2-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14218 RXN-14218] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * Synonym(s): == React...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TA...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14218 RXN-14218] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] ==
* direction:
+
* taxonomic range:
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
** ORF
+
** N10-formyl-tetrahydrofolate biosynthesis
 
* Synonym(s):
 
* Synonym(s):
 +
** N10-formyl-THF biosynthesis
  
== Reaction Formula ==
+
== Reaction(s) found ==
* With identifiers:
+
'''7''' reactions found over '''9''' reactions in the full pathway
** 1 [[WATER]][c] '''+''' 1 [[DGDP]][c] '''=>''' 1 [[DGMP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c]
+
* [[1.5.1.20-RXN]]
* With common name(s):
+
** 2 associated gene(s):
** 1 H2O[c] '''+''' 1 dGDP[c] '''=>''' 1 dGMP[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c]
+
*** [[Tiso_gene_14582]]
 
+
*** [[Tiso_gene_16954]]
== Genes associated with this reaction  ==
+
** 4 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-in-silico_annotation]]
* [[Tiso_gene_20236]]
+
*** [[manual-primary_network]]
** [[pantograph]]-[[esiliculosus]]
+
*** [[annotation-experimental_annotation]]
* [[Tiso_gene_12899]]
+
*** [[orthology-esiliculosus]]
** IN-SILICO_ANNOTATION
+
* [[DIHYDROFOLATEREDUCT-RXN]]
***EC-NUMBER
+
** 0 associated gene:
** EXPERIMENTAL_ANNOTATION
+
** 1 reconstruction source(s) associated:
***EC-NUMBER
+
*** [[manual-primary_network]]
== Pathways  ==
+
* [[GLYOHMETRANS-RXN]]
== Reconstruction information  ==
+
** 4 associated gene(s):
* [[orthology]]:
+
*** [[Tiso_gene_16153]]
** [[pantograph]]:
+
*** [[Tiso_gene_7776]]
*** [[esiliculosus]]
+
*** [[Tiso_gene_18652]]
* [[annotation]]:
+
*** [[Tiso_gene_16154]]
** [[pathwaytools]]:
+
** 4 reconstruction source(s) associated:
*** [[experimental_annotation]]
+
*** [[annotation-experimental_annotation]]
*** [[in-silico_annotation]]
+
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[HOMOCYSMETB12-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_1602]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[METHENYLTHFCYCLOHYDRO-RXN]]
 +
** 0 associated gene:
 +
** 1 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
* [[METHYLENETHFDEHYDROG-NADP-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_6004]]
 +
*** [[Tiso_gene_432]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[THYMIDYLATESYN-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_7708]]
 +
*** [[Tiso_gene_18478]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=5-FORMYL-THF-CYCLO-LIGASE-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=GCVMULTI-RXN GCVMULTI-RXN]
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
+
* ECOCYC:
{{#set: common name=ORF}}
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
{{#set: gene associated=Tiso_gene_20236|Tiso_gene_12899}}
+
{{#set: taxonomic range=TAX-4751}}
{{#set: in pathway=}}
+
{{#set: taxonomic range=TAX-33208}}
{{#set: reconstruction category=orthology}}
+
{{#set: taxonomic range=TAX-2}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=N10-formyl-tetrahydrofolate biosynthesis}}
{{#set: reconstruction source=esiliculosus}}
+
{{#set: common name=N10-formyl-THF biosynthesis}}
{{#set: reconstruction category=annotation}}
+
{{#set: reaction found=7}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: total reaction=9}}
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: completion rate=78.0}}

Latest revision as of 20:22, 21 March 2018

Pathway 1CMET2-PWY

  • taxonomic range:
  • common name:
    • N10-formyl-tetrahydrofolate biosynthesis
  • Synonym(s):
    • N10-formyl-THF biosynthesis

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links