Difference between revisions of "AMP-DEPHOSPHORYLATION-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7783 PWY-7783] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7783 PWY-7783] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** plasmalogen degradation
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** 5_-nucleotidase
 +
** 5_deoxy_cytosolic_type_c_protein
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''2''' reaction(s) found
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* With identifiers:
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** [[RXN-17735]]
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** 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADENOSINE]][c]
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** [[RXN-17736]]
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* With common name(s):
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== Reaction(s) not found ==
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** 1 AMP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 adenosine[c]
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* '''6''' reaction(s) not found
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-17741 RXN-17741]
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== Genes associated with this reaction ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-17740 RXN-17740]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=3.3.2.5-RXN 3.3.2.5-RXN]
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* Gene: [[Tiso_gene_6640]]
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** [http://metacyc.org/META/NEW-IMAGE?object=3.3.2.2-RXN 3.3.2.2-RXN]
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** Source: [[orthology-esiliculosus]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-17737 RXN-17737]
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* Gene: [[Tiso_gene_6988]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-17738 RXN-17738]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14434]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14435]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14246]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33208}}
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* RHEA:
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{{#set: common name=plasmalogen degradation}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29375 29375]
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{{#set: reaction found=2}}
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* LIGAND-RXN:
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{{#set: reaction not found=6}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P06196 P06196]
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** [http://www.uniprot.org/uniprot/P21588 P21588]
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** [http://www.uniprot.org/uniprot/O34313 O34313]
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** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
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** [http://www.uniprot.org/uniprot/O29385 O29385]
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** [http://www.uniprot.org/uniprot/P44569 P44569]
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** [http://www.uniprot.org/uniprot/O83142 O83142]
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** [http://www.uniprot.org/uniprot/P49902 P49902]
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** [http://www.uniprot.org/uniprot/P22848 P22848]
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** [http://www.uniprot.org/uniprot/Q05927 Q05927]
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** [http://www.uniprot.org/uniprot/P21589 P21589]
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** [http://www.uniprot.org/uniprot/P29240 P29240]
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** [http://www.uniprot.org/uniprot/P07024 P07024]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=5_-nucleotidase}}
 +
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
 +
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
 +
{{#set: common name=ORF}}
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{{#set: ec number=EC-3.1.3.5}}
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{{#set: gene associated=Tiso_gene_6640|Tiso_gene_6988|Tiso_gene_14434|Tiso_gene_5911|Tiso_gene_13929|Tiso_gene_14435|Tiso_gene_14246}}
 +
{{#set: in pathway=SALVADEHYPOX-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:22, 21 March 2018

Reaction AMP-DEPHOSPHORYLATION-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_-nucleotidase
    • 5_deoxy_cytosolic_type_c_protein
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 AMP[c] + 1 H2O[c] => 1 phosphate[c] + 1 adenosine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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