Difference between revisions of "BADH-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.2.1...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** 3-oxoacyl-synthase
+
−
** polyketide_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[ACETYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[BETAINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 an acetyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 CO2[c]
+
** 1 betaine aldehyde[c] '''+''' 1 H2O[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 glycine betaine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_3513]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_15991]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5939]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14485]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19302]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
+
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
+
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
+
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P23902 P23902]
+
** [http://www.uniprot.org/uniprot/P17202 P17202]
−
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
+
** [http://www.uniprot.org/uniprot/P17445 P17445]
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
** [http://www.uniprot.org/uniprot/P28237 P28237]
−
** [http://www.uniprot.org/uniprot/P43710 P43710]
+
** [http://www.uniprot.org/uniprot/P42757 P42757]
−
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
+
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
−
** [http://www.uniprot.org/uniprot/O67612 O67612]
+
** [http://www.uniprot.org/uniprot/O24174 O24174]
−
** [http://www.uniprot.org/uniprot/P20582 P20582]
+
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
−
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
+
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
−
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
+
** [http://www.uniprot.org/uniprot/O22477 O22477]
−
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P43711 P43711]
+
{{#set: ec number=EC-1.2.1.8}}
−
** [http://www.uniprot.org/uniprot/O25284 O25284]
+
{{#set: gene associated=Tiso_gene_3513}}
−
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
+
{{#set: in pathway=CHOLINE-BETAINE-ANA-PWY|PWY1F-353|PWY-7494|BETSYN-PWY|PWY-3722}}
−
** [http://www.uniprot.org/uniprot/O34340 O34340]
+
−
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
+
−
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
+
−
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
+
−
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
+
−
** [http://www.uniprot.org/uniprot/P41175 P41175]
+
−
** [http://www.uniprot.org/uniprot/P31176 P31176]
+
−
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
+
−
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
+
−
** [http://www.uniprot.org/uniprot/P73283 P73283]
+
−
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
+
−
** [http://www.uniprot.org/uniprot/O64485 O64485]
+
−
** [http://www.uniprot.org/uniprot/O65677 O65677]
+
−
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
+
−
** [http://www.uniprot.org/uniprot/O23738 O23738]
+
−
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
+
−
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
+
−
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
+
−
** [http://www.uniprot.org/uniprot/O54440 O54440]
+
−
** [http://www.uniprot.org/uniprot/P55338 P55338]
+
−
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
+
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
+
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=3-oxoacyl-synthase}}
+
−
{{#set: common name=polyketide_synthase}}
+
−
{{#set: ec number=EC-2.3.1.86}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: ec number=EC-2.3.1.41}}
+
−
{{#set: gene associated=Tiso_gene_500|Tiso_gene_15991|Tiso_gene_5939|Tiso_gene_135|Tiso_gene_14485|Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_19302|Tiso_gene_136}}
+
−
{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:23, 21 March 2018

Reaction BADH-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 betaine aldehyde[c] + 1 H2O[c] + 1 NAD+[c] <=> 1 NADH[c] + 2 H+[c] + 1 glycine betaine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CHOLINE-BETAINE-ANA-PWY, choline degradation I: CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY1F-353, glycine betaine biosynthesis III (plants): PWY1F-353
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7494, choline degradation IV: PWY-7494
    • 2 reactions found over 4 reactions in the full pathway
  • BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria): BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3722, glycine betaine biosynthesis II (Gram-positive bacteria): PWY-3722
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=BADH-RXN&oldid=41310"