Difference between revisions of "PPGPPMET-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10062 RXN-10062] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-hexacos-2-enoyl-[acp]...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 T...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10062 RXN-10062] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** trans-hexacos-2-enoyl-[acp] reductase
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** ppGpp biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.9 EC-1.3.1.9]
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* Synonym(s):
 
* Synonym(s):
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** guanosine 3'-diphosphate 5'-diphosphate biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''6''' reactions in the full pathway
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** 1 [[NADH]][c] '''+''' 1 [[Trans-D2-hexacos-2-enoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Cerotoyl-ACPs]][c] '''+''' 1 [[NAD]][c]
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* [[GDPKIN-RXN]]
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* With common name(s):
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** 6 associated gene(s):
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** 1 NADH[c] '''+''' 1 a trans-hexacos-2-enoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a cerotoyl-[acp][c] '''+''' 1 NAD+[c]
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*** [[Tiso_gene_17271]]
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*** [[Tiso_gene_195]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_9290]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_18224]]
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* [[Tiso_gene_10778]]
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*** [[Tiso_gene_17272]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_16529]]
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== Pathways  ==
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** 7 reconstruction source(s) associated:
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* [[PWY-6113]], superpathway of mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6113 PWY-6113]
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*** [[annotation-experimental_annotation]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
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*** [[annotation-in-silico_annotation]]
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** '''86''' reactions found over '''182''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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*** [[orthology-synechocystis]]
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* [[orthology]]:
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*** [[manual-primary_network]]
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** [[pantograph]]:
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*** [[orthology-creinhardtii]]
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*** [[esiliculosus]]
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* [[GDPPYPHOSKIN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_16305]]
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*** [[Tiso_gene_7349]]
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*** [[Tiso_gene_6799]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[GTPPYPHOSKIN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_16305]]
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*** [[Tiso_gene_6799]]
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*** [[Tiso_gene_7349]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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* [[PPGPPSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6799]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[RXN0-6427]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6799]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PPPGPPHYDRO-RXN PPPGPPHYDRO-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: common name=trans-hexacos-2-enoyl-[acp] reductase}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
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{{#set: ec number=EC-1.3.1.9}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Tiso_gene_10778}}
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{{#set: common name=ppGpp biosynthesis}}
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{{#set: in pathway=PWY-6113|PWYG-321}}
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{{#set: common name=guanosine 3'-diphosphate 5'-diphosphate biosynthesis}}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction found=5}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: total reaction=6}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: completion rate=83.0}}

Latest revision as of 19:26, 21 March 2018

Pathway PPGPPMET-PWY

  • taxonomic range:
  • common name:
    • ppGpp biosynthesis
  • Synonym(s):
    • guanosine 3'-diphosphate 5'-diphosphate biosynthesis

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PPGPPMET-PWY&oldid=41642"