Difference between revisions of "CPD-12513"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] == * direction: ** REVERSIBLE * common name: ** ghmp_n-terminal_doma...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12513 CPD-12513] == * smiles: ** C3(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N2(C=CC(=O...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTOKIN-RXN GALACTOKIN-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12513 CPD-12513] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C3(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2)))C(O)C(O)C(O)3)
 
* common name:
 
* common name:
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** ghmp_n-terminal_domain-containing_protein
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** UDP-β-L-arabinopyranose
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** ORF
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* inchi key:
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** galactokinase-like_protein
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** InChIKey=DQQDLYVHOTZLOR-IAZOVDBXSA-L
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* ec number:
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.7.1.6 EC-2.7.1.6]
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** 534.263   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[UDP-ARABINOSE-4-EPIMERASE-RXN]]
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** 1 &alpha;-D-galactose[c] '''+''' 1 ATP[c] '''<=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 &alpha;-D-galactose 1-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_10797]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5041]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5042]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_11795]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12191]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13553 13553]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25246220 25246220]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61457 61457]
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* UNIPROT:
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{{#set: smiles=C3(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2)))C(O)C(O)C(O)3)}}
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** [http://www.uniprot.org/uniprot/P09608 P09608]
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{{#set: common name=UDP-&beta;-L-arabinopyranose}}
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** [http://www.uniprot.org/uniprot/Q01415 Q01415]
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{{#set: inchi key=InChIKey=DQQDLYVHOTZLOR-IAZOVDBXSA-L}}
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** [http://www.uniprot.org/uniprot/P22713 P22713]
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{{#set: molecular weight=534.263    }}
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** [http://www.uniprot.org/uniprot/P31767 P31767]
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{{#set: reversible reaction associated=UDP-ARABINOSE-4-EPIMERASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
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** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
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** [http://www.uniprot.org/uniprot/P96993 P96993]
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** [http://www.uniprot.org/uniprot/P04385 P04385]
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** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
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** [http://www.uniprot.org/uniprot/P13227 P13227]
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** [http://www.uniprot.org/uniprot/P39574 P39574]
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** [http://www.uniprot.org/uniprot/P13045 P13045]
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** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ghmp_n-terminal_domain-containing_protein}}
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{{#set: common name=ORF}}
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{{#set: common name=galactokinase-like_protein}}
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{{#set: ec number=EC-2.7.1.6}}
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{{#set: gene associated=Tiso_gene_10797|Tiso_gene_5041|Tiso_gene_5042|Tiso_gene_11795|Tiso_gene_12191}}
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{{#set: in pathway=PWY-6317|PWY66-422|PWY-6527|PWY-3821}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:29, 21 March 2018

Metabolite CPD-12513

  • smiles:
    • C3(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2)))C(O)C(O)C(O)3)
  • common name:
    • UDP-β-L-arabinopyranose
  • inchi key:
    • InChIKey=DQQDLYVHOTZLOR-IAZOVDBXSA-L
  • molecular weight:
    • 534.263
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C3(OC(OP(=O)([O-])OP(=O)([O-])OCC1(OC(C(O)C(O)1)N2(C=CC(=O)NC(=O)2)))C(O)C(O)C(O)3)" cannot be used as a page name in this wiki.



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