Difference between revisions of "Tiso gene 18870"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEHYDROG-RXN HOMOSERDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** homoser...")
(Created page with "Category:Gene == Gene Tiso_gene_18870 == * right end position: ** 2742 * transcription direction: ** POSITIVE * left end position: ** 10 * centisome position: ** 0.3642987...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEHYDROG-RXN HOMOSERDEHYDROG-RXN] ==
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== Gene Tiso_gene_18870 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2742
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* common name:
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* transcription direction:
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** homoserine_dehydrogenase
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** POSITIVE
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** related_to_met2-homoserine_o-acetyltransferase
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* left end position:
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* ec number:
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** 10
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** [http://enzyme.expasy.org/EC/1.1.1.3 EC-1.1.1.3]
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* centisome position:
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** 0.36429873   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.4.16.4-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[HOMO-SER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 NAD(P)H[c] '''+''' 1 L-aspartate-semialdehyde[c] '''=>''' 1 NAD(P)+[c] '''+''' 1 L-homoserine[c]
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* Reaction: [[BETA-LACTAMASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-11065]]
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* [[Tiso_gene_5558]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-11302]]
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* [[Tiso_gene_1148]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-11351]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_4345]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-16649]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
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* Reaction: [[RXN-16659]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* [[orthology]]:
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== Pathways associated ==
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** [[pantograph]]:
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* [[PWY-6471]]
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*** [[esiliculosus]]
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* [[PWY0-1586]]
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* [[manual]]:
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* [[PWY-5265]]
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=2742}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01773 R01773]
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01775 R01775]
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{{#set: left end position=10}}
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* UNIPROT:
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{{#set: centisome position=0.36429873    }}
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** [http://www.uniprot.org/uniprot/P44505 P44505]
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{{#set: reaction associated=3.4.16.4-RXN|BETA-LACTAMASE-RXN|RXN-11065|RXN-11302|RXN-11351|RXN-16649|RXN-16659}}
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** [http://www.uniprot.org/uniprot/Q58997 Q58997]
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{{#set: pathway associated=PWY-6471|PWY0-1586|PWY-5265}}
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** [http://www.uniprot.org/uniprot/P27725 P27725]
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** [http://www.uniprot.org/uniprot/O67677 O67677]
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** [http://www.uniprot.org/uniprot/P19582 P19582]
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** [http://www.uniprot.org/uniprot/P00561 P00561]
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** [http://www.uniprot.org/uniprot/P00562 P00562]
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** [http://www.uniprot.org/uniprot/P08499 P08499]
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** [http://www.uniprot.org/uniprot/Q9JR84 Q9JR84]
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** [http://www.uniprot.org/uniprot/Q9PIX8 Q9PIX8]
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** [http://www.uniprot.org/uniprot/P56429 P56429]
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** [http://www.uniprot.org/uniprot/O27300 O27300]
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** [http://www.uniprot.org/uniprot/Q9CGD8 Q9CGD8]
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** [http://www.uniprot.org/uniprot/P52985 P52985]
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** [http://www.uniprot.org/uniprot/P31116 P31116]
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** [http://www.uniprot.org/uniprot/P37142 P37142]
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** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18]
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** [http://www.uniprot.org/uniprot/P52986 P52986]
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** [http://www.uniprot.org/uniprot/P49079 P49079]
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** [http://www.uniprot.org/uniprot/P49080 P49080]
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** [http://www.uniprot.org/uniprot/P93402 P93402]
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** [http://www.uniprot.org/uniprot/O81852 O81852]
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** [http://www.uniprot.org/uniprot/O63067 O63067]
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** [http://www.uniprot.org/uniprot/O65027 O65027]
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** [http://www.uniprot.org/uniprot/P46806 P46806]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=homoserine_dehydrogenase}}
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{{#set: common name=related_to_met2-homoserine_o-acetyltransferase}}
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{{#set: ec number=EC-1.1.1.3}}
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{{#set: gene associated=Tiso_gene_5558|Tiso_gene_1148|Tiso_gene_4345}}
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{{#set: in pathway=HOMOSERSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:29, 21 March 2018

Gene Tiso_gene_18870

  • right end position:
    • 2742
  • transcription direction:
    • POSITIVE
  • left end position:
    • 10
  • centisome position:
    • 0.36429873
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18870&oldid=41940"