Difference between revisions of "RIBOKIN-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-DECARBOXYLASE-RXN TYROSINE-DECARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-DECARBOXYLASE-RXN TYROSINE-DECARBOXYLASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://enzyme.expasy.org/EC/4.1.1.25 EC-4.1.1.25]
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* common name:
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** ribose degradation
 
* Synonym(s):
 
* Synonym(s):
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** ribose catabolism
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''3''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[TYR]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[TYRAMINE]][c]
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* [[RIBOKIN-RXN]]
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* With common name(s):
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** 6 associated gene(s):
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** 1 H+[c] '''+''' 1 L-tyrosine[c] '''=>''' 1 CO2[c] '''+''' 1 tyramine[c]
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*** [[Tiso_gene_911]]
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*** [[Tiso_gene_17974]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18204]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_82]]
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* [[Tiso_gene_3686]]
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*** [[Tiso_gene_81]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_7682]]
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== Pathways  ==
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** 3 reconstruction source(s) associated:
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* [[PWY-3581]], (S)-reticuline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3581 PWY-3581]
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*** [[annotation-in-silico_annotation]]
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** '''3''' reactions found over '''11''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-6133]], (S)-reticuline biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6133 PWY-6133]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[RXN-14904]]
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* [[PWY-5254]], methanofuran biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5254 PWY-5254]
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** 0 associated gene:
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** '''1''' reactions found over '''8''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY-7826]], Amaryllidacea alkaloids biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7826 PWY-7826]
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*** [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''25''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[PWY-7297]], octopamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7297 PWY-7297]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5304 RXN0-5304]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5474]], hydroxycinnamic acid tyramine amides biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5474 PWY-5474]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6802]], salidroside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6802 PWY-6802]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14345 14345]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00736 R00736]
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{{#set: taxonomic range=TAX-2157}}
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* UNIPROT:
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{{#set: common name=ribose degradation}}
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** [http://www.uniprot.org/uniprot/Q06086 Q06086]
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{{#set: common name=ribose catabolism}}
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** [http://www.uniprot.org/uniprot/P54768 P54768]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P54769 P54769]
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{{#set: total reaction=3}}
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** [http://www.uniprot.org/uniprot/P54770 P54770]
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{{#set: completion rate=67.0}}
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** [http://www.uniprot.org/uniprot/O82417 O82417]
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** [http://www.uniprot.org/uniprot/P54771 P54771]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.1.1.25}}
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{{#set: gene associated=Tiso_gene_3686}}
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{{#set: in pathway=PWY-3581|PWY-6133|PWY-5254|PWY-7826|PWY-7297|PWY-5474|PWY-6802}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Latest revision as of 19:30, 21 March 2018

Pathway RIBOKIN-PWY

  • taxonomic range:
  • common name:
    • ribose degradation
  • Synonym(s):
    • ribose catabolism

Reaction(s) found

2 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RIBOKIN-PWY&oldid=41996"