Difference between revisions of "Tiso gene 4505"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] == * direction: ** REVERSIBLE * common name: ** bifunctional_eno...")
(Created page with "Category:Gene == Gene Tiso_gene_4505 == * right end position: ** 6253 * transcription direction: ** POSITIVE * left end position: ** 3880 * centisome position: ** 26.26235...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] ==
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== Gene Tiso_gene_4505 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 6253
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* common name:
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* transcription direction:
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** bifunctional_enolase2transcriptionalactivator
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** POSITIVE
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** bifunctional_enolase_2_transcriptional_activator
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* left end position:
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** enolase_1
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** 3880
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/4.2.1.11 EC-4.2.1.11]
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** 26.262352   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-1281]]
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** 1 [[2-PG]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 2-phospho-D-glycerate[c] '''<=>''' 1 H2O[c] '''+''' 1 phosphoenolpyruvate[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_13317]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_8720]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_5619]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14718]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6253}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10164 10164]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3880}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
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{{#set: centisome position=26.262352    }}
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* UNIPROT:
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{{#set: reaction associated=RXN0-1281}}
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** [http://www.uniprot.org/uniprot/P04764 P04764]
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** [http://www.uniprot.org/uniprot/P07322 P07322]
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** [http://www.uniprot.org/uniprot/P07323 P07323]
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** [http://www.uniprot.org/uniprot/P06733 P06733]
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** [http://www.uniprot.org/uniprot/P19140 P19140]
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** [http://www.uniprot.org/uniprot/P25704 P25704]
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** [http://www.uniprot.org/uniprot/P30575 P30575]
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** [http://www.uniprot.org/uniprot/P33675 P33675]
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** [http://www.uniprot.org/uniprot/P47647 P47647]
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** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
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** [http://www.uniprot.org/uniprot/P37869 P37869]
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** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
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** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
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** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
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** [http://www.uniprot.org/uniprot/P43806 P43806]
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** [http://www.uniprot.org/uniprot/P42448 P42448]
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** [http://www.uniprot.org/uniprot/P42848 P42848]
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** [http://www.uniprot.org/uniprot/Q05524 Q05524]
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** [http://www.uniprot.org/uniprot/P42897 P42897]
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** [http://www.uniprot.org/uniprot/P40370 P40370]
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** [http://www.uniprot.org/uniprot/P51913 P51913]
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** [http://www.uniprot.org/uniprot/P26300 P26300]
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** [http://www.uniprot.org/uniprot/Q42887 Q42887]
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** [http://www.uniprot.org/uniprot/P25696 P25696]
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** [http://www.uniprot.org/uniprot/P00924 P00924]
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** [http://www.uniprot.org/uniprot/P00925 P00925]
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** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
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** [http://www.uniprot.org/uniprot/P29201 P29201]
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** [http://www.uniprot.org/uniprot/P09104 P09104]
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** [http://www.uniprot.org/uniprot/P21550 P21550]
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** [http://www.uniprot.org/uniprot/P08734 P08734]
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** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
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** [http://www.uniprot.org/uniprot/P15429 P15429]
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** [http://www.uniprot.org/uniprot/P13929 P13929]
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** [http://www.uniprot.org/uniprot/P15007 P15007]
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** [http://www.uniprot.org/uniprot/P17182 P17182]
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** [http://www.uniprot.org/uniprot/P17183 P17183]
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** [http://www.uniprot.org/uniprot/P26301 P26301]
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** [http://www.uniprot.org/uniprot/P31683 P31683]
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** [http://www.uniprot.org/uniprot/Q54274 Q54274]
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** [http://www.uniprot.org/uniprot/P42896 P42896]
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** [http://www.uniprot.org/uniprot/Q27727 Q27727]
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** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
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** [http://www.uniprot.org/uniprot/P48285 P48285]
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** [http://www.uniprot.org/uniprot/Q12007 Q12007]
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** [http://www.uniprot.org/uniprot/P42222 P42222]
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** [http://www.uniprot.org/uniprot/P75189 P75189]
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** [http://www.uniprot.org/uniprot/P77972 P77972]
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** [http://www.uniprot.org/uniprot/Q49059 Q49059]
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** [http://www.uniprot.org/uniprot/P42895 P42895]
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** [http://www.uniprot.org/uniprot/Q42971 Q42971]
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** [http://www.uniprot.org/uniprot/Q43130 Q43130]
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** [http://www.uniprot.org/uniprot/O69174 O69174]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=bifunctional_enolase2transcriptionalactivator}}
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{{#set: common name=bifunctional_enolase_2_transcriptional_activator}}
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{{#set: common name=enolase_1}}
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{{#set: ec number=EC-4.2.1.11}}
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{{#set: gene associated=Tiso_gene_13317|Tiso_gene_8720|Tiso_gene_5619|Tiso_gene_14718}}
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{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|PWY-1622|PWY66-399|GLYCOLYSIS|PWY-6901|PWY-7218|NPGLUCAT-PWY|P124-PWY|ANAGLYCOLYSIS-PWY|PWY-5723|PWY-6142|GLUCONEO-PWY|PWY-5484|PWY-7124|PWY-6886|P122-PWY|PWY-7003}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:32, 21 March 2018

Gene Tiso_gene_4505

  • right end position:
    • 6253
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3880
  • centisome position:
    • 26.262352
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4505&oldid=42211"