Difference between revisions of "SARCOSINE-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSE6PSYN-RXN TREHALOSE6PSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** trehalose...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE-DEHYDROGENASE-RXN SARCOSINE-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TREHALOSE6PSYN-RXN TREHALOSE6PSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SARCOSINE-DEHYDROGENASE-RXN SARCOSINE-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trehalose-6-phosphate_synthase
+
** sarcosine_dehydrogenase
−
** -trehalose-phosphate_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.15 EC-2.4.1.15]
+
** [http://enzyme.expasy.org/EC/1.5.8.3 EC-1.5.8.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-12575]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TREHALOSE-6P]][c]
+
** 1 [[ETF-Oxidized]][c] '''+''' 1 [[SARCOSINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[ETF-Reduced]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP-α-D-glucose[c] '''+''' 1 D-glucopyranose 6-phosphate[c] '''=>''' 1 UDP[c] '''+''' 1 H+[c] '''+''' 1 α,α-trehalose 6-phosphate[c]
+
** 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 sarcosine[c] '''+''' 1 H2O[c] '''+''' 1 H+[c] '''=>''' 1 formaldehyde[c] '''+''' 1 glycine[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18196]]
+
* Gene: [[Tiso_gene_14788]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14366]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_6869]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_14220]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14367]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRESYN-PWY]], trehalose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TRESYN-PWY TRESYN-PWY]
+
* [[CRNFORCAT-PWY]], creatinine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CRNFORCAT-PWY CRNFORCAT-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-4722]], creatinine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4722 PWY-4722]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18889 18889]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19793 19793]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00836 R00836]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00611 R00611]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P31677 P31677]
+
−
** [http://www.uniprot.org/uniprot/Q00764 Q00764]
+
−
** [http://www.uniprot.org/uniprot/P38427 P38427]
+
−
** [http://www.uniprot.org/uniprot/Q07158 Q07158]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trehalose-6-phosphate_synthase}}
+
{{#set: common name=sarcosine_dehydrogenase}}
−
{{#set: common name=-trehalose-phosphate_synthase}}
+
{{#set: ec number=EC-1.5.8.3}}
−
{{#set: ec number=EC-2.4.1.15}}
+
{{#set: gene associated=Tiso_gene_14788}}
−
{{#set: gene associated=Tiso_gene_18196|Tiso_gene_14366|Tiso_gene_6869|Tiso_gene_14220|Tiso_gene_14367}}
+
{{#set: in pathway=CRNFORCAT-PWY|PWY-4722}}
−
{{#set: in pathway=TRESYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 19:32, 21 March 2018

Reaction SARCOSINE-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • sarcosine_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an oxidized electron-transfer flavoprotein[c] + 1 sarcosine[c] + 1 H2O[c] + 1 H+[c] => 1 formaldehyde[c] + 1 glycine[c] + 1 a reduced electron-transfer flavoprotein[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • CRNFORCAT-PWY, creatinine degradation I: CRNFORCAT-PWY
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-4722, creatinine degradation II: PWY-4722
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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