Difference between revisions of "MALSYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=UROPORPHYRINOGEN-III UROPORPHYRINOGEN-III] == * smiles: ** C(=O)([O-])CCC3(C(=C2(CC5(NC(CC4(NC(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate_synthase_g * ec nu...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=UROPORPHYRINOGEN-III UROPORPHYRINOGEN-III] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALSYN-RXN MALSYN-RXN] ==
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* smiles:
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* direction:
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** C(=O)([O-])CCC3(C(=C2(CC5(NC(CC4(NC(CC1(NC(=C(C=1CC(=O)[O-])CCC(=O)[O-])CC(N2)=3))=C(CC(=O)[O-])C=4CCC(=O)[O-]))=C(CC([O-])=O)C(CCC(=O)[O-])=5)))CC(=O)[O-])
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=HUHWZXWWOFSFKF-UHFFFAOYSA-F
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* common name:
 
* common name:
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** uroporphyrinogen-III
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** malate_synthase_g
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* molecular weight:
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* ec number:
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** 828.742   
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** [http://enzyme.expasy.org/EC/2.3.3.9 EC-2.3.3.9]
 
* Synonym(s):
 
* Synonym(s):
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** uroporphyrinogen III
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-13403]]
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* With identifiers:
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* [[UROPORIIIMETHYLTRANSA-RXN]]
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** 1 [[GLYOX]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[MAL]][c] '''+''' 1 [[CO-A]][c]
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* [[UROGENDECARBOX-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 glyoxylate[c] '''+''' 1 acetyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 (S)-malate[c] '''+''' 1 coenzyme A[c]
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* [[UROGENIIISYN-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_14377]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-7295]], L-arabinose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7295 PWY-7295]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7294]], xylose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7294 PWY-7294]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[GLYOXDEG-PWY]], glycolate and glyoxylate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXDEG-PWY GLYOXDEG-PWY]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 +
** '''11''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
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* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 1976-85-8
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* RHEA:
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* METABOLIGHTS : MTBLC57308
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18181 18181]
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* PUBCHEM:
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* PIR:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25202645 25202645]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40715 I40715]
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* HMDB : HMDB01086
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0195 JX0195]
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* LIGAND-CPD:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0196 JX0196]
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** [http://www.genome.jp/dbget-bin/www_bget?C01051 C01051]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15387 S15387]
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* CHEBI:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17773 S17773]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57308 57308]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17774 S17774]
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* BIGG : uppg3
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26645 S26645]
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{{#set: smiles=C(=O)([O-])CCC3(C(=C2(CC5(NC(CC4(NC(CC1(NC(=C(C=1CC(=O)[O-])CCC(=O)[O-])CC(N2)=3))=C(CC(=O)[O-])C=4CCC(=O)[O-]))=C(CC([O-])=O)C(CCC(=O)[O-])=5)))CC(=O)[O-])}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44186 S44186]
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{{#set: inchi key=InChIKey=HUHWZXWWOFSFKF-UHFFFAOYSA-F}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S48493 S48493]
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{{#set: common name=uroporphyrinogen-III}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51788 S51788]
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{{#set: molecular weight=828.742    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCNMU SYCNMU]
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{{#set: common name=uroporphyrinogen III}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYCSM2 SYCSM2]
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{{#set: consumed by=RXN-13403|UROPORIIIMETHYLTRANSA-RXN|UROGENDECARBOX-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYECMA SYECMA]
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{{#set: produced by=UROGENIIISYN-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYHQMA SYHQMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYKVMA SYKVMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=SYRPMA SYRPMA]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03412 T03412]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07690 T07690]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44752 T44752]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00472 R00472]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P42450 P42450]
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** [http://www.uniprot.org/uniprot/Q02216 Q02216]
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** [http://www.uniprot.org/uniprot/P28344 P28344]
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** [http://www.uniprot.org/uniprot/P28345 P28345]
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** [http://www.uniprot.org/uniprot/P30952 P30952]
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** [http://www.uniprot.org/uniprot/Q43827 Q43827]
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** [http://www.uniprot.org/uniprot/P21826 P21826]
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** [http://www.uniprot.org/uniprot/P37330 P37330]
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** [http://www.uniprot.org/uniprot/P17432 P17432]
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** [http://www.uniprot.org/uniprot/P17815 P17815]
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** [http://www.uniprot.org/uniprot/P08997 P08997]
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** [http://www.uniprot.org/uniprot/P21360 P21360]
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** [http://www.uniprot.org/uniprot/P08216 P08216]
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** [http://www.uniprot.org/uniprot/P13244 P13244]
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** [http://www.uniprot.org/uniprot/P49081 P49081]
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** [http://www.uniprot.org/uniprot/P45458 P45458]
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** [http://www.uniprot.org/uniprot/O32913 O32913]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=malate_synthase_g}}
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{{#set: ec number=EC-2.3.3.9}}
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{{#set: gene associated=Tiso_gene_14377}}
 +
{{#set: in pathway=PWY-7295|PWY-7294|GLYOXDEG-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|PWY-7118}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:35, 21 March 2018

Reaction MALSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • malate_synthase_g
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 glyoxylate[c] + 1 acetyl-CoA[c] + 1 H2O[c] => 1 H+[c] + 1 (S)-malate[c] + 1 coenzyme A[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7295, L-arabinose degradation IV: PWY-7295
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7294, xylose degradation IV: PWY-7294
    • 2 reactions found over 7 reactions in the full pathway
  • GLYOXDEG-PWY, glycolate and glyoxylate degradation II: GLYOXDEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 9 reactions found over 11 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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