Difference between revisions of "P3-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydratase **...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P3-PWY P3-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P3-PWY P3-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
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** 3-isopropylmalate dehydratase
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** gallate degradation III (anaerobic)
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** ORF
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* Synonym(s):
 
* Synonym(s):
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** (2R,3S)-3-isopropylmalate hydro-lyase
 
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** β-isopropylmalate dehydratase
 
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** α-isopropylmalate isomerase
 
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** 3-isopropylmalate hydro-lyase
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''11''' reactions in the full pathway
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** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c]
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* [[RXN-11667]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H2O[c] '''+''' 1 2-isopropylmaleate[c]
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*** [[Tiso_gene_5857]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_12778]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.97.1.2-RXN 1.97.1.2-RXN]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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** EXPERIMENTAL_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=GALLATE-DECARBOXYLASE-RXN GALLATE-DECARBOXYLASE-RXN]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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** [[pantograph]]-[[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R11-RXN R11-RXN]
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R5-RXN R5-RXN]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R6-RXN R6-RXN]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=R7-RXN R7-RXN]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=R8-RXN R8-RXN]
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* UM-BBD-PWY : gal
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
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{{#set: taxonomic range=TAX-1239}}
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* LIGAND-RXN:
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{{#set: common name=gallate degradation III (anaerobic)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
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{{#set: reaction found=1}}
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{{#set: direction=REVERSIBLE}}
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{{#set: total reaction=11}}
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{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: completion rate=9.0}}
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{{#set: common name=ORF}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: gene associated=Tiso_gene_12778}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:16, 21 March 2018

Pathway P3-PWY

  • taxonomic range:
  • common name:
    • gallate degradation III (anaerobic)
  • Synonym(s):

Reaction(s) found

1 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

  • UM-BBD-PWY : gal



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