Difference between revisions of "Tiso gene 16765"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** prolyl_4-hydroxylas...")
(Created page with "Category:Gene == Gene Tiso_gene_16765 == * right end position: ** 3679 * transcription direction: ** NEGATIVE * left end position: ** 428 * centisome position: ** 10.35066...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.2-RXN 1.14.11.2-RXN] ==
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== Gene Tiso_gene_16765 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3679
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* common name:
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* transcription direction:
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** prolyl_4-hydroxylase
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** NEGATIVE
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** ORF
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* left end position:
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* ec number:
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** 428
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** [http://enzyme.expasy.org/EC/1.14.11.2 EC-1.14.11.2]
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* centisome position:
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** 10.350665   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[CHD-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PROCOLLAGEN-L-PROLINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-6321]][c] '''+''' 1 [[SUC]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 a [procollagen]-L-proline[c] '''=>''' 1 CO2[c] '''+''' 1 a [procollagen] trans 4-hyroxy-L-proline[c] '''+''' 1 succinate[c]
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* Reaction: [[RXN0-7230]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_4246]]
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* [[CHOLINE-BETAINE-ANA-PWY]]
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** IN-SILICO_ANNOTATION
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* [[BETSYN-PWY]]
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_17823]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18933]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_16122]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18235]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_292]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_15594]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9035]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18208]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18145]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_15328]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_6296]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_3021]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_17593]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_2280]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9165]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9873]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_17919]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9636]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18689]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_16842]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_19638]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9227]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9455]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_1468]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_13008]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2158]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_8652]]
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** [[pantograph]]-[[esiliculosus]]
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−
== Pathways ==
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3679}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03219 R03219]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: left end position=428}}
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** [http://www.uniprot.org/uniprot/P21195 P21195]
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{{#set: centisome position=10.350665    }}
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** [http://www.uniprot.org/uniprot/Q10576 Q10576]
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{{#set: reaction associated=CHD-RXN|RXN0-7230}}
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** [http://www.uniprot.org/uniprot/P16924 P16924]
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{{#set: pathway associated=CHOLINE-BETAINE-ANA-PWY|BETSYN-PWY}}
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** [http://www.uniprot.org/uniprot/P13674 P13674]
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** [http://www.uniprot.org/uniprot/P05307 P05307]
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** [http://www.uniprot.org/uniprot/P09102 P09102]
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** [http://www.uniprot.org/uniprot/P07237 P07237]
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** [http://www.uniprot.org/uniprot/Q922C8 Q922C8]
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** [http://www.uniprot.org/uniprot/P04785 P04785]
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** [http://www.uniprot.org/uniprot/P54001 P54001]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=prolyl_4-hydroxylase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.14.11.2}}
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−
{{#set: gene associated=Tiso_gene_4246|Tiso_gene_17823|Tiso_gene_18933|Tiso_gene_16122|Tiso_gene_18235|Tiso_gene_292|Tiso_gene_15594|Tiso_gene_9035|Tiso_gene_18208|Tiso_gene_18145|Tiso_gene_15328|Tiso_gene_6296|Tiso_gene_3021|Tiso_gene_17593|Tiso_gene_2280|Tiso_gene_9165|Tiso_gene_9873|Tiso_gene_17919|Tiso_gene_9636|Tiso_gene_18689|Tiso_gene_16842|Tiso_gene_19638|Tiso_gene_9227|Tiso_gene_9455|Tiso_gene_1468|Tiso_gene_13008|Tiso_gene_2158|Tiso_gene_8652}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:41, 21 March 2018

Gene Tiso_gene_16765

  • right end position:
    • 3679
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 428
  • centisome position:
    • 10.350665
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16765&oldid=43199"