Difference between revisions of "PWY-2261"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** uroporphy...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261] ==
* direction:
+
* taxonomic range:
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
 
* common name:
 
* common name:
** uroporphyrinogen_decarboxylase
+
** ascorbate glutathione cycle
** uroporphyrinogen_chloroplast
+
* ec number:
+
** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** hydrogen peroxide detoxification
  
== Reaction Formula ==
+
== Reaction(s) found ==
* With identifiers:
+
'''2''' reactions found over '''4''' reactions in the full pathway
** 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
+
* [[RXN-3521]]
* With common name(s):
+
** 3 associated gene(s):
** 4 H+[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 4 CO2[c] '''+''' 1 coproporphyrinogen III[c]
+
*** [[Tiso_gene_16028]]
 
+
*** [[Tiso_gene_15962]]
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_5435]]
Genes have been associated with this reaction based on different elements listed below.
+
** 1 reconstruction source(s) associated:
* [[Tiso_gene_18743]]
+
*** [[annotation-in-silico_annotation]]
** IN-SILICO_ANNOTATION
+
* [[RXN-3523]]
***EC-NUMBER
+
** 0 associated gene:
** EXPERIMENTAL_ANNOTATION
+
** 1 reconstruction source(s) associated:
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
** [[pantograph]]-[[esiliculosus]]
+
== Reaction(s) not found ==
* [[Tiso_gene_18744]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=1.8.5.1-RXN 1.8.5.1-RXN]
** IN-SILICO_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-3522 RXN-3522]
***EC-NUMBER
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_19684]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_5173]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[synechocystis]]
+
** [[pantograph]]-[[esiliculosus]]
+
** [[pantograph]]-[[creinhardtii]]
+
== Pathways  ==
+
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
+
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
+
** '''4''' reactions found over '''9''' reactions in the full pathway
+
== Reconstruction information  ==
+
* [[orthology]]:
+
** [[pantograph]]:
+
*** [[creinhardtii]]
+
*** [[synechocystis]]
+
*** [[esiliculosus]]
+
* [[manual]]:
+
** [[primary_network]]
+
* [[annotation]]:
+
** [[pathwaytools]]:
+
*** [[experimental_annotation]]
+
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
* RHEA:
+
* ARACYC:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865]
+
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-2261 PWY-2261]
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-33682}}
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
+
{{#set: taxonomic range=TAX-33090}}
* UNIPROT:
+
{{#set: taxonomic range=TAX-1117}}
** [http://www.uniprot.org/uniprot/P06132 P06132]
+
{{#set: common name=ascorbate glutathione cycle}}
** [http://www.uniprot.org/uniprot/P16891 P16891]
+
{{#set: common name=hydrogen peroxide detoxification}}
** [http://www.uniprot.org/uniprot/P32395 P32395]
+
{{#set: reaction found=2}}
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
+
{{#set: total reaction=4}}
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
+
{{#set: completion rate=50.0}}
** [http://www.uniprot.org/uniprot/P29680 P29680]
+
** [http://www.uniprot.org/uniprot/P32347 P32347]
+
** [http://www.uniprot.org/uniprot/P32920 P32920]
+
** [http://www.uniprot.org/uniprot/P54224 P54224]
+
** [http://www.uniprot.org/uniprot/O81220 O81220]
+
** [http://www.uniprot.org/uniprot/P70697 P70697]
+
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=uroporphyrinogen_decarboxylase}}
+
{{#set: common name=uroporphyrinogen_chloroplast}}
+
{{#set: ec number=EC-4.1.1.37}}
+
{{#set: gene associated=Tiso_gene_18743|Tiso_gene_18744|Tiso_gene_19684|Tiso_gene_5173}}
+
{{#set: in pathway=HEMESYN2-PWY|PWY0-1415|HEME-BIOSYNTHESIS-II|PWY-7766|CHLOROPHYLL-SYN|PWY-7159|PWY-5531}}
+
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
+
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction source=primary_network}}
+
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:41, 21 March 2018

Pathway PWY-2261

  • taxonomic range:
  • common name:
    • ascorbate glutathione cycle
  • Synonym(s):
    • hydrogen peroxide detoxification

Reaction(s) found

2 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links