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− | [[Category:Reaction]] | + | [[Category:Pathway]] |
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2261 PWY-2261] == |
− | * direction: | + | * taxonomic range: |
− | ** LEFT-TO-RIGHT | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682] |
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090] |
| + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117] |
| * common name: | | * common name: |
− | ** uroporphyrinogen_decarboxylase | + | ** ascorbate glutathione cycle |
− | ** uroporphyrinogen_chloroplast
| + | |
− | * ec number:
| + | |
− | ** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
| + | |
| * Synonym(s): | | * Synonym(s): |
| + | ** hydrogen peroxide detoxification |
| | | |
− | == Reaction Formula == | + | == Reaction(s) found == |
− | * With identifiers:
| + | '''2''' reactions found over '''4''' reactions in the full pathway |
− | ** 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
| + | * [[RXN-3521]] |
− | * With common name(s): | + | ** 3 associated gene(s): |
− | ** 4 H+[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 4 CO2[c] '''+''' 1 coproporphyrinogen III[c] | + | *** [[Tiso_gene_16028]] |
− | | + | *** [[Tiso_gene_15962]] |
− | == Genes associated with this reaction ==
| + | *** [[Tiso_gene_5435]] |
− | Genes have been associated with this reaction based on different elements listed below.
| + | ** 1 reconstruction source(s) associated: |
− | * [[Tiso_gene_18743]] | + | *** [[annotation-in-silico_annotation]] |
− | ** IN-SILICO_ANNOTATION | + | * [[RXN-3523]] |
− | ***EC-NUMBER
| + | ** 0 associated gene: |
− | ** EXPERIMENTAL_ANNOTATION
| + | ** 1 reconstruction source(s) associated: |
− | ***EC-NUMBER
| + | *** [[annotation-in-silico_annotation]] |
− | ** [[pantograph]]-[[esiliculosus]] | + | == Reaction(s) not found == |
− | * [[Tiso_gene_18744]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=1.8.5.1-RXN 1.8.5.1-RXN] |
− | ** IN-SILICO_ANNOTATION
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-3522 RXN-3522] |
− | ***EC-NUMBER
| + | |
− | ** [[pantograph]]-[[esiliculosus]] | + | |
− | * [[Tiso_gene_19684]] | + | |
− | ** IN-SILICO_ANNOTATION | + | |
− | ***EC-NUMBER | + | |
− | ** EXPERIMENTAL_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** [[pantograph]]-[[esiliculosus]] | + | |
− | * [[Tiso_gene_5173]] | + | |
− | ** IN-SILICO_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** EXPERIMENTAL_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** [[pantograph]]-[[synechocystis]]
| + | |
− | ** [[pantograph]]-[[esiliculosus]] | + | |
− | ** [[pantograph]]-[[creinhardtii]] | + | |
− | == Pathways ==
| + | |
− | * [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
| + | |
− | ** '''3''' reactions found over '''4''' reactions in the full pathway | + | |
− | * [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415] | + | |
− | ** '''5''' reactions found over '''6''' reactions in the full pathway
| + | |
− | * [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
| + | |
− | ** '''4''' reactions found over '''4''' reactions in the full pathway | + | |
− | * [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
| + | |
− | ** '''1''' reactions found over '''4''' reactions in the full pathway
| + | |
− | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
| + | |
− | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
− | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
| + | |
− | ** '''8''' reactions found over '''9''' reactions in the full pathway | + | |
− | * [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
| + | |
− | ** '''4''' reactions found over '''9''' reactions in the full pathway
| + | |
− | == Reconstruction information ==
| + | |
− | * [[orthology]]:
| + | |
− | ** [[pantograph]]:
| + | |
− | *** [[creinhardtii]]
| + | |
− | *** [[synechocystis]]
| + | |
− | *** [[esiliculosus]]
| + | |
− | * [[manual]]:
| + | |
− | ** [[primary_network]]
| + | |
− | * [[annotation]]:
| + | |
− | ** [[pathwaytools]]:
| + | |
− | *** [[experimental_annotation]]
| + | |
− | *** [[in-silico_annotation]]
| + | |
| == External links == | | == External links == |
− | * RHEA: | + | * ARACYC: |
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865] | + | ** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-2261 PWY-2261] |
− | * LIGAND-RXN:
| + | {{#set: taxonomic range=TAX-33682}} |
− | ** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
| + | {{#set: taxonomic range=TAX-33090}} |
− | * UNIPROT:
| + | {{#set: taxonomic range=TAX-1117}} |
− | ** [http://www.uniprot.org/uniprot/P06132 P06132]
| + | {{#set: common name=ascorbate glutathione cycle}} |
− | ** [http://www.uniprot.org/uniprot/P16891 P16891]
| + | {{#set: common name=hydrogen peroxide detoxification}} |
− | ** [http://www.uniprot.org/uniprot/P32395 P32395]
| + | {{#set: reaction found=2}} |
− | ** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
| + | {{#set: total reaction=4}} |
− | ** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
| + | {{#set: completion rate=50.0}} |
− | ** [http://www.uniprot.org/uniprot/P29680 P29680]
| + | |
− | ** [http://www.uniprot.org/uniprot/P32347 P32347]
| + | |
− | ** [http://www.uniprot.org/uniprot/P32920 P32920]
| + | |
− | ** [http://www.uniprot.org/uniprot/P54224 P54224]
| + | |
− | ** [http://www.uniprot.org/uniprot/O81220 O81220]
| + | |
− | ** [http://www.uniprot.org/uniprot/P70697 P70697]
| + | |
− | {{#set: direction=LEFT-TO-RIGHT}} | + | |
− | {{#set: common name=uroporphyrinogen_decarboxylase}} | + | |
− | {{#set: common name=uroporphyrinogen_chloroplast}}
| + | |
− | {{#set: ec number=EC-4.1.1.37}}
| + | |
− | {{#set: gene associated=Tiso_gene_18743|Tiso_gene_18744|Tiso_gene_19684|Tiso_gene_5173}} | + | |
− | {{#set: in pathway=HEMESYN2-PWY|PWY0-1415|HEME-BIOSYNTHESIS-II|PWY-7766|CHLOROPHYLL-SYN|PWY-7159|PWY-5531}}
| + | |
− | {{#set: reconstruction category=orthology}} | + | |
− | {{#set: reconstruction tool=pantograph}} | + | |
− | {{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}} | + | |
− | {{#set: reconstruction category=manual}} | + | |
− | {{#set: reconstruction source=primary_network}} | + | |
− | {{#set: reconstruction category=annotation}}
| + | |
− | {{#set: reconstruction tool=pathwaytools}}
| + | |
− | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |