Difference between revisions of "Tiso gene 7167"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUPEROX-DISMUT-RXN SUPEROX-DISMUT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** superoxid...")
(Created page with "Category:Gene == Gene Tiso_gene_7167 == * right end position: ** 5898 * transcription direction: ** POSITIVE * left end position: ** 1430 * centisome position: ** 12.50765...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUPEROX-DISMUT-RXN SUPEROX-DISMUT-RXN] ==
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== Gene Tiso_gene_7167 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5898
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* common name:
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* transcription direction:
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** superoxide_dismutase
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** POSITIVE
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** ORF
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* left end position:
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* ec number:
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** 1430
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** [http://enzyme.expasy.org/EC/1.15.1.1 EC-1.15.1.1]
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* centisome position:
 +
** 12.507653   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN]]
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** 2 [[SUPER-OXIDE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 2 superoxide[c] '''+''' 2 H+[c] '''=>''' 1 oxygen[c] '''+''' 1 hydrogen peroxide[c]
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** Source: [[orthology-esiliculosus]]
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+
* Reaction: [[RXN66-579]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_12652]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-2301]]
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** [[pantograph]]-[[synechocystis]]
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* [[PWY-4661]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6580]]
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* [[Tiso_gene_15757]]
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* [[PWY-6664]]
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** IN-SILICO_ANNOTATION
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* [[PWY1G-0]]
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***EC-NUMBER
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* [[PWY-6372]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_3587]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_20023]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_12651]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
== Pathways ==
+
−
* [[DETOX1-PWY]], superoxide radicals degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
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−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-6854]], ethylene biosynthesis III (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6854 PWY-6854]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
−
* [[DETOX1-PWY-1]], reactive oxygen species degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1]
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−
** '''5''' reactions found over '''6''' reactions in the full pathway
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−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[synechocystis]]
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−
*** [[esiliculosus]]
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−
* [[annotation]]:
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−
** [[pathwaytools]]:
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−
*** [[experimental_annotation]]
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−
*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: right end position=5898}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20696 20696]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=1430}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00275 R00275]
+
{{#set: centisome position=12.507653    }}
−
* UNIPROT:
+
{{#set: reaction associated=MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN|RXN66-579}}
−
** [http://www.uniprot.org/uniprot/P11419 P11419]
+
{{#set: pathway associated=PWY-2301|PWY-4661|PWY-6580|PWY-6664|PWY1G-0|PWY-6372}}
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** [http://www.uniprot.org/uniprot/P09670 P09670]
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** [http://www.uniprot.org/uniprot/P09213 P09213]
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** [http://www.uniprot.org/uniprot/P11428 P11428]
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** [http://www.uniprot.org/uniprot/P15453 P15453]
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** [http://www.uniprot.org/uniprot/P09737 P09737]
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** [http://www.uniprot.org/uniprot/P20379 P20379]
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** [http://www.uniprot.org/uniprot/P07509 P07509]
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** [http://www.uniprot.org/uniprot/P16026 P16026]
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** [http://www.uniprot.org/uniprot/P19666 P19666]
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** [http://www.uniprot.org/uniprot/P25841 P25841]
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** [http://www.uniprot.org/uniprot/P09738 P09738]
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** [http://www.uniprot.org/uniprot/P19665 P19665]
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** [http://www.uniprot.org/uniprot/P19685 P19685]
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** [http://www.uniprot.org/uniprot/P28755 P28755]
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** [http://www.uniprot.org/uniprot/P34107 P34107]
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** [http://www.uniprot.org/uniprot/P34697 P34697]
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** [http://www.uniprot.org/uniprot/P41979 P41979]
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−
** [http://www.uniprot.org/uniprot/Q08420 Q08420]
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** [http://www.uniprot.org/uniprot/Q01137 Q01137]
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** [http://www.uniprot.org/uniprot/P53652 P53652]
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−
** [http://www.uniprot.org/uniprot/Q7M4I8 Q7M4I8]
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** [http://www.uniprot.org/uniprot/P25842 P25842]
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** [http://www.uniprot.org/uniprot/P41980 P41980]
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** [http://www.uniprot.org/uniprot/P53641 P53641]
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** [http://www.uniprot.org/uniprot/P54375 P54375]
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** [http://www.uniprot.org/uniprot/O67149 O67149]
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** [http://www.uniprot.org/uniprot/Q9Z9C4 Q9Z9C4]
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** [http://www.uniprot.org/uniprot/Q9RU48 Q9RU48]
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** [http://www.uniprot.org/uniprot/Q9RUV2 Q9RUV2]
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** [http://www.uniprot.org/uniprot/P41978 P41978]
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** [http://www.uniprot.org/uniprot/P43725 P43725]
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** [http://www.uniprot.org/uniprot/O35023 O35023]
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** [http://www.uniprot.org/uniprot/O67470 O67470]
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** [http://www.uniprot.org/uniprot/Q9JUW9 Q9JUW9]
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** [http://www.uniprot.org/uniprot/P00442 P00442]
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** [http://www.uniprot.org/uniprot/P00449 P00449]
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** [http://www.uniprot.org/uniprot/P00445 P00445]
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** [http://www.uniprot.org/uniprot/P00447 P00447]
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** [http://www.uniprot.org/uniprot/P0AGD3 P0AGD3]
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** [http://www.uniprot.org/uniprot/P00448 P00448]
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−
** [http://www.uniprot.org/uniprot/P61851 P61851]
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** [http://www.uniprot.org/uniprot/P00446 P00446]
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−
** [http://www.uniprot.org/uniprot/P00443 P00443]
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** [http://www.uniprot.org/uniprot/P09224 P09224]
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** [http://www.uniprot.org/uniprot/P00441 P00441]
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** [http://www.uniprot.org/uniprot/P08294 P08294]
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** [http://www.uniprot.org/uniprot/P04179 P04179]
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** [http://www.uniprot.org/uniprot/P24704 P24704]
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** [http://www.uniprot.org/uniprot/P24705 P24705]
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** [http://www.uniprot.org/uniprot/P04178 P04178]
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** [http://www.uniprot.org/uniprot/P11964 P11964]
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−
** [http://www.uniprot.org/uniprot/P27084 P27084]
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** [http://www.uniprot.org/uniprot/P09678 P09678]
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** [http://www.uniprot.org/uniprot/P07895 P07895]
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** [http://www.uniprot.org/uniprot/P22233 P22233]
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** [http://www.uniprot.org/uniprot/P07505 P07505]
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** [http://www.uniprot.org/uniprot/P03946 P03946]
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** [http://www.uniprot.org/uniprot/Q7M137 Q7M137]
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** [http://www.uniprot.org/uniprot/P43312 P43312]
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** [http://www.uniprot.org/uniprot/Q9ZKE6 Q9ZKE6]
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** [http://www.uniprot.org/uniprot/P57005 P57005]
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** [http://www.uniprot.org/uniprot/P18868 P18868]
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** [http://www.uniprot.org/uniprot/O66602 O66602]
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** [http://www.uniprot.org/uniprot/Q9ZD15 Q9ZD15]
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−
** [http://www.uniprot.org/uniprot/Q9Y8H8 Q9Y8H8]
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−
** [http://www.uniprot.org/uniprot/Q59623 Q59623]
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** [http://www.uniprot.org/uniprot/Q9JZV6 Q9JZV6]
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** [http://www.uniprot.org/uniprot/O84296 O84296]
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** [http://www.uniprot.org/uniprot/P53640 P53640]
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** [http://www.uniprot.org/uniprot/P11796 P11796]
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** [http://www.uniprot.org/uniprot/Q59081 Q59081]
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** [http://www.uniprot.org/uniprot/P24702 P24702]
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** [http://www.uniprot.org/uniprot/Q59165 Q59165]
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** [http://www.uniprot.org/uniprot/P37369 P37369]
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** [http://www.uniprot.org/uniprot/P42821 P42821]
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** [http://www.uniprot.org/uniprot/Q59307 Q59307]
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** [http://www.uniprot.org/uniprot/Q59315 Q59315]
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** [http://www.uniprot.org/uniprot/P41976 P41976]
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** [http://www.uniprot.org/uniprot/P09671 P09671]
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** [http://www.uniprot.org/uniprot/P07632 P07632]
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** [http://www.uniprot.org/uniprot/P28764 P28764]
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−
** [http://www.uniprot.org/uniprot/P80293 P80293]
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** [http://www.uniprot.org/uniprot/Q42683 Q42683]
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** [http://www.uniprot.org/uniprot/P31161 P31161]
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** [http://www.uniprot.org/uniprot/Q59452 Q59452]
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** [http://www.uniprot.org/uniprot/P0AGD1 P0AGD1]
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−
** [http://www.uniprot.org/uniprot/Q59094 Q59094]
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** [http://www.uniprot.org/uniprot/O30826 O30826]
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** [http://www.uniprot.org/uniprot/P34461 P34461]
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** [http://www.uniprot.org/uniprot/Q27538 Q27538]
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−
** [http://www.uniprot.org/uniprot/Q9ZWM8 Q9ZWM8]
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−
** [http://www.uniprot.org/uniprot/P08228 P08228]
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−
** [http://www.uniprot.org/uniprot/P27082 P27082]
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** [http://www.uniprot.org/uniprot/P31108 P31108]
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** [http://www.uniprot.org/uniprot/Q7M1R5 Q7M1R5]
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−
** [http://www.uniprot.org/uniprot/P28759 P28759]
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−
** [http://www.uniprot.org/uniprot/Q8LEP0 Q8LEP0]
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−
** [http://www.uniprot.org/uniprot/Q7M4X8 Q7M4X8]
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** [http://www.uniprot.org/uniprot/Q7M0X9 Q7M0X9]
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** [http://www.uniprot.org/uniprot/P22799 P22799]
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** [http://www.uniprot.org/uniprot/Q7M1U7 Q7M1U7]
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** [http://www.uniprot.org/uniprot/Q7M236 Q7M236]
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** [http://www.uniprot.org/uniprot/Q7M1U6 Q7M1U6]
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** [http://www.uniprot.org/uniprot/Q7M1U5 Q7M1U5]
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** [http://www.uniprot.org/uniprot/P09223 P09223]
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** [http://www.uniprot.org/uniprot/P10791 P10791]
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** [http://www.uniprot.org/uniprot/P10792 P10792]
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** [http://www.uniprot.org/uniprot/Q43273 Q43273]
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** [http://www.uniprot.org/uniprot/P11418 P11418]
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** [http://www.uniprot.org/uniprot/P13926 P13926]
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** [http://www.uniprot.org/uniprot/P61852 P61852]
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** [http://www.uniprot.org/uniprot/P13367 P13367]
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** [http://www.uniprot.org/uniprot/P23345 P23345]
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** [http://www.uniprot.org/uniprot/P14830 P14830]
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** [http://www.uniprot.org/uniprot/P15107 P15107]
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** [http://www.uniprot.org/uniprot/P23417 P23417]
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** [http://www.uniprot.org/uniprot/P17670 P17670]
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** [http://www.uniprot.org/uniprot/P24706 P24706]
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** [http://www.uniprot.org/uniprot/P28763 P28763]
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** [http://www.uniprot.org/uniprot/P24669 P24669]
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** [http://www.uniprot.org/uniprot/P24707 P24707]
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** [http://www.uniprot.org/uniprot/P28757 P28757]
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** [http://www.uniprot.org/uniprot/P28760 P28760]
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** [http://www.uniprot.org/uniprot/P28756 P28756]
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** [http://www.uniprot.org/uniprot/P28766 P28766]
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** [http://www.uniprot.org/uniprot/P28762 P28762]
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** [http://www.uniprot.org/uniprot/Q00637 Q00637]
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** [http://www.uniprot.org/uniprot/P28761 P28761]
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** [http://www.uniprot.org/uniprot/P28765 P28765]
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** [http://www.uniprot.org/uniprot/P28767 P28767]
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** [http://www.uniprot.org/uniprot/P28768 P28768]
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** [http://www.uniprot.org/uniprot/P28758 P28758]
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** [http://www.uniprot.org/uniprot/Q7M240 Q7M240]
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** [http://www.uniprot.org/uniprot/Q7M239 Q7M239]
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** [http://www.uniprot.org/uniprot/Q7M237 Q7M237]
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** [http://www.uniprot.org/uniprot/Q7M238 Q7M238]
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** [http://www.uniprot.org/uniprot/P80174 P80174]
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** [http://www.uniprot.org/uniprot/P09212 P09212]
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** [http://www.uniprot.org/uniprot/Q08713 Q08713]
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** [http://www.uniprot.org/uniprot/P33431 P33431]
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** [http://www.uniprot.org/uniprot/P35017 P35017]
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** [http://www.uniprot.org/uniprot/Q07796 Q07796]
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** [http://www.uniprot.org/uniprot/P53639 P53639]
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** [http://www.uniprot.org/uniprot/P14831 P14831]
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** [http://www.uniprot.org/uniprot/Q07182 Q07182]
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** [http://www.uniprot.org/uniprot/P41981 P41981]
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** [http://www.uniprot.org/uniprot/Q9R4U1 Q9R4U1]
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** [http://www.uniprot.org/uniprot/Q60036 Q60036]
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** [http://www.uniprot.org/uniprot/P53643 P53643]
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** [http://www.uniprot.org/uniprot/P53644 P53644]
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** [http://www.uniprot.org/uniprot/P53645 P53645]
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** [http://www.uniprot.org/uniprot/P53646 P53646]
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** [http://www.uniprot.org/uniprot/P53649 P53649]
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** [http://www.uniprot.org/uniprot/P53647 P53647]
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** [http://www.uniprot.org/uniprot/P46728 P46728]
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** [http://www.uniprot.org/uniprot/P53650 P53650]
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** [http://www.uniprot.org/uniprot/P53648 P53648]
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** [http://www.uniprot.org/uniprot/P41977 P41977]
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** [http://www.uniprot.org/uniprot/Q64466 Q64466]
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** [http://www.uniprot.org/uniprot/Q7M235 Q7M235]
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** [http://www.uniprot.org/uniprot/Q59433 Q59433]
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** [http://www.uniprot.org/uniprot/P0A4J5 P0A4J5]
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** [http://www.uniprot.org/uniprot/Q59806 Q59806]
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** [http://www.uniprot.org/uniprot/P0A4J6 P0A4J6]
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** [http://www.uniprot.org/uniprot/Q59434 Q59434]
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** [http://www.uniprot.org/uniprot/Q43779 Q43779]
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** [http://www.uniprot.org/uniprot/Q27740 Q27740]
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** [http://www.uniprot.org/uniprot/Q27460 Q27460]
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** [http://www.uniprot.org/uniprot/Q59519 Q59519]
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** [http://www.uniprot.org/uniprot/P80566 P80566]
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** [http://www.uniprot.org/uniprot/P93801 P93801]
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** [http://www.uniprot.org/uniprot/P77968 P77968]
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** [http://www.uniprot.org/uniprot/P93407 P93407]
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** [http://www.uniprot.org/uniprot/Q43008 Q43008]
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** [http://www.uniprot.org/uniprot/Q43803 Q43803]
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** [http://www.uniprot.org/uniprot/Q43121 Q43121]
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** [http://www.uniprot.org/uniprot/P21276 P21276]
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** [http://www.uniprot.org/uniprot/Q96123 Q96123]
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** [http://www.uniprot.org/uniprot/Q96185 Q96185]
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** [http://www.uniprot.org/uniprot/Q02610 Q02610]
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** [http://www.uniprot.org/uniprot/O24400 O24400]
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** [http://www.uniprot.org/uniprot/P93606 P93606]
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** [http://www.uniprot.org/uniprot/O22373 O22373]
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** [http://www.uniprot.org/uniprot/O49066 O49066]
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** [http://www.uniprot.org/uniprot/Q42684 Q42684]
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** [http://www.uniprot.org/uniprot/O65324 O65324]
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** [http://www.uniprot.org/uniprot/O65768 O65768]
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** [http://www.uniprot.org/uniprot/Q42672 Q42672]
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** [http://www.uniprot.org/uniprot/O81233 O81233]
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** [http://www.uniprot.org/uniprot/O23785 O23785]
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** [http://www.uniprot.org/uniprot/Q42862 Q42862]
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** [http://www.uniprot.org/uniprot/O49044 O49044]
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** [http://www.uniprot.org/uniprot/Q90023 Q90023]
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** [http://www.uniprot.org/uniprot/Q9YMI3 Q9YMI3]
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** [http://www.uniprot.org/uniprot/O92400 O92400]
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** [http://www.uniprot.org/uniprot/O51917 O51917]
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** [http://www.uniprot.org/uniprot/P61502 P61502]
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** [http://www.uniprot.org/uniprot/O08459 O08459]
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** [http://www.uniprot.org/uniprot/O08461 O08461]
+
−
** [http://www.uniprot.org/uniprot/P53653 P53653]
+
−
** [http://www.uniprot.org/uniprot/Q9LYK8 Q9LYK8]
+
−
** [http://www.uniprot.org/uniprot/Q03302 Q03302]
+
−
** [http://www.uniprot.org/uniprot/Q03300 Q03300]
+
−
** [http://www.uniprot.org/uniprot/Q03301 Q03301]
+
−
** [http://www.uniprot.org/uniprot/Q9UQX0 Q9UQX0]
+
−
** [http://www.uniprot.org/uniprot/O81235 O81235]
+
−
** [http://www.uniprot.org/uniprot/Q9SM64 Q9SM64]
+
−
** [http://www.uniprot.org/uniprot/Q9STB5 Q9STB5]
+
−
** [http://www.uniprot.org/uniprot/Q9M532 Q9M532]
+
−
** [http://www.uniprot.org/uniprot/O82584 O82584]
+
−
** [http://www.uniprot.org/uniprot/O82519 O82519]
+
−
** [http://www.uniprot.org/uniprot/O78310 O78310]
+
−
** [http://www.uniprot.org/uniprot/O81236 O81236]
+
−
** [http://www.uniprot.org/uniprot/O81240 O81240]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=superoxide_dismutase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.15.1.1}}
+
−
{{#set: gene associated=Tiso_gene_12652|Tiso_gene_15757|Tiso_gene_3587|Tiso_gene_20023|Tiso_gene_12651}}
+
−
{{#set: in pathway=DETOX1-PWY|PWY-6854|DETOX1-PWY-1}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:45, 21 March 2018

Gene Tiso_gene_7167

  • right end position:
    • 5898
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1430
  • centisome position:
    • 12.507653
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7167&oldid=43593"