Difference between revisions of "VALDEG-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLGLUCOSAMINEMUT-RXN PHOSACETYLGLUCOSAMINEMUT-RXN] == * direction: ** REVERSIBLE * common n...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TA...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLGLUCOSAMINEMUT-RXN PHOSACETYLGLUCOSAMINEMUT-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
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** atp-dependent_metalloprotease
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** L-valine degradation I
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** phosphoacetylglucosamine_mutase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.4.2.3 EC-5.4.2.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''8''' reactions in the full pathway
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** 1 [[N-ACETYL-D-GLUCOSAMINE-6-P]][c] '''<=>''' 1 [[N-ACETYL-D-GLUCOSAMINE-1-P]][c]
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* [[1.2.1.25-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 N-acetyl-D-glucosamine 6-phosphate[c] '''<=>''' 1 N-acetyl-&alpha;-D-glucosamine 1-phosphate[c]
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*** [[Tiso_gene_3260]]
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*** [[Tiso_gene_11793]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_13231]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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* [[2.6.1.22-RXN]]
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***AUTOMATED-NAME-MATCH
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** 0 associated gene:
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** [[pantograph]]-[[athaliana]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_13230]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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* [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
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***EC-NUMBER
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** 6 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_7107]]
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***EC-NUMBER
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*** [[Tiso_gene_19772]]
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== Pathways  ==
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*** [[Tiso_gene_5857]]
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* [[UDPNACETYLGALSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGALSYN-PWY UDPNACETYLGALSYN-PWY]
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*** [[Tiso_gene_19592]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_19590]]
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* [[PWY-6906]], chitin derivatives degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6906 PWY-6906]
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*** [[Tiso_gene_19771]]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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** 5 reconstruction source(s) associated:
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* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
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*** [[annotation-experimental_annotation]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* [[orthology]]:
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*** [[orthology-creinhardtii]]
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** [[pantograph]]:
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*** [[orthology-esiliculosus]]
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*** [[esiliculosus]]
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* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
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*** [[athaliana]]
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** 1 associated gene(s):
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* [[annotation]]:
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*** [[Tiso_gene_2224]]
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** [[pathwaytools]]:
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** 3 reconstruction source(s) associated:
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*** [[experimental_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18403]]
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*** [[Tiso_gene_14984]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[MEPROPCOA-FAD-RXN]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[METHYLACYLYLCOA-HYDROXY-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_14262]]
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*** [[Tiso_gene_14257]]
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*** [[Tiso_gene_5857]]
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*** [[Tiso_gene_6885]]
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*** [[Tiso_gene_16145]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-11213]]
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** 1 associated gene(s):
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*** [[Tiso_gene_11323]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23804 23804]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08193 R08193]
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{{#set: taxonomic range=TAX-201174}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.uniprot.org/uniprot/P38628 P38628]
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{{#set: taxonomic range=TAX-1239}}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=L-valine degradation I}}
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{{#set: common name=atp-dependent_metalloprotease}}
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{{#set: reaction found=8}}
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{{#set: common name=phosphoacetylglucosamine_mutase}}
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{{#set: total reaction=8}}
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{{#set: ec number=EC-5.4.2.3}}
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{{#set: completion rate=100.0}}
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{{#set: gene associated=Tiso_gene_13231|Tiso_gene_13230}}
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{{#set: in pathway=UDPNACETYLGALSYN-PWY|PWY-6906|PWY-5514}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:45, 21 March 2018

Pathway VALDEG-PWY

Reaction(s) found

8 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links





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