Difference between revisions of "PWY-7118"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33154 TAX-33154]
 
* common name:
 
* common name:
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** ORF
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** chitin degradation to ethanol
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** delta-1-pyrroline-5-carboxylate_synthase
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** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
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* ec number:
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** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''6''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[GLT]][c]
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* [[1.1.1.39-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 H2O[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 L-glutamate[c]
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*** [[Tiso_gene_12896]]
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*** [[Tiso_gene_6675]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_12200]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_7381]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[ACETATE--COA-LIGASE-RXN]]
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***EC-NUMBER
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** 3 associated gene(s):
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* [[Tiso_gene_18338]]
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*** [[Tiso_gene_3617]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_1612]]
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***EC-NUMBER
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*** [[Tiso_gene_3616]]
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* [[Tiso_gene_3513]]
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** 6 reconstruction source(s) associated:
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_9680]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_18337]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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*** [[orthology-creinhardtii]]
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** EXPERIMENTAL_ANNOTATION
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* [[ALCOHOL-DEHYDROG-RXN]]
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***EC-NUMBER
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** 6 associated gene(s):
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* [[Tiso_gene_16634]]
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*** [[Tiso_gene_18459]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_7649]]
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***EC-NUMBER
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*** [[Tiso_gene_6563]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_5424]]
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***EC-NUMBER
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*** [[Tiso_gene_5425]]
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* [[Tiso_gene_886]]
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*** [[Tiso_gene_6562]]
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** [[pantograph]]-[[synechocystis]]
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_6952]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** [[orthology-synechocystis]]
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== Pathways  ==
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* [[MALSYN-RXN]]
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* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
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** 1 associated gene(s):
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_14377]]
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* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
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** 3 reconstruction source(s) associated:
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853]
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*** [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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== Reaction(s) not found ==
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* [[orthology]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=CHITIN-DEACETYLASE-RXN CHITIN-DEACETYLASE-RXN]
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** [[pantograph]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6161 RXN-6161]
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*** [[synechocystis]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33154}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
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{{#set: common name=chitin degradation to ethanol}}
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* LIGAND-RXN:
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{{#set: reaction found=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
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{{#set: total reaction=6}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=67.0}}
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{{#set: common name=ORF}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
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{{#set: ec number=EC-1.2.1.88}}
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{{#set: gene associated=Tiso_gene_7381|Tiso_gene_18338|Tiso_gene_3513|Tiso_gene_9680|Tiso_gene_18337|Tiso_gene_16634|Tiso_gene_886|Tiso_gene_6952}}
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{{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:46, 21 March 2018

Pathway PWY-7118

  • taxonomic range:
  • common name:
    • chitin degradation to ethanol
  • Synonym(s):

Reaction(s) found

4 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7118&oldid=43616"