Difference between revisions of "RXN-14116"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CATAL-RXN CATAL-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CATAL-RXN CATAL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ORF
 +
** delta-1-pyrroline-5-carboxylate_synthase
 +
** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.11.1.6 EC-1.11.1.6]
+
** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88]
−
** [http://enzyme.expasy.org/EC/1.11.1.21 EC-1.11.1.21]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[HYDROGEN-PEROXIDE]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[GLT]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 hydrogen peroxide[c] '''=>''' 2 H2O[c] '''+''' 1 oxygen[c]
+
** 1 H2O[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 NAD+[c] '''=>''' 2 H+[c] '''+''' 1 NADH[c] '''+''' 1 L-glutamate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12499]]
+
* Gene: [[Tiso_gene_6952]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[orthology-synechocystis]]
−
* [[Tiso_gene_11916]]
+
* Gene: [[Tiso_gene_3513]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[orthology-synechocystis]]
−
* [[Tiso_gene_5435]]
+
* Gene: [[Tiso_gene_7381]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_3006]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_11607]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
* Gene: [[Tiso_gene_16634]]
−
* [[Tiso_gene_4990]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_15923]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_19683]]
+
* Gene: [[Tiso_gene_18338]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_886]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_9680]]
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_18337]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5506]], methanol oxidation to formaldehyde IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5506 PWY-5506]
+
* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[DETOX1-PWY-1]], reactive oxygen species degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1]
+
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[DETOX1-PWY]], superoxide radicals degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
+
* [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20309 20309]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00009 R00009]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P11934 P11934]
+
−
** [http://www.uniprot.org/uniprot/P24270 P24270]
+
−
** [http://www.uniprot.org/uniprot/P21179 P21179]
+
−
** [http://www.uniprot.org/uniprot/P24168 P24168]
+
−
** [http://www.uniprot.org/uniprot/Q7M184 Q7M184]
+
−
** [http://www.uniprot.org/uniprot/P0A327 P0A327]
+
−
** [http://www.uniprot.org/uniprot/P45737 P45737]
+
−
** [http://www.uniprot.org/uniprot/P42321 P42321]
+
−
** [http://www.uniprot.org/uniprot/O28050 O28050]
+
−
** [http://www.uniprot.org/uniprot/Q59337 Q59337]
+
−
** [http://www.uniprot.org/uniprot/P77872 P77872]
+
−
** [http://www.uniprot.org/uniprot/P00432 P00432]
+
−
** [http://www.uniprot.org/uniprot/P15202 P15202]
+
−
** [http://www.uniprot.org/uniprot/P06115 P06115]
+
−
** [http://www.uniprot.org/uniprot/P07820 P07820]
+
−
** [http://www.uniprot.org/uniprot/P17750 P17750]
+
−
** [http://www.uniprot.org/uniprot/P13029 P13029]
+
−
** [http://www.uniprot.org/uniprot/P17336 P17336]
+
−
** [http://www.uniprot.org/uniprot/P04040 P04040]
+
−
** [http://www.uniprot.org/uniprot/P25890 P25890]
+
−
** [http://www.uniprot.org/uniprot/P04762 P04762]
+
−
** [http://www.uniprot.org/uniprot/P29756 P29756]
+
−
** [http://www.uniprot.org/uniprot/P44390 P44390]
+
−
** [http://www.uniprot.org/uniprot/P42234 P42234]
+
−
** [http://www.uniprot.org/uniprot/Q9JRF5 Q9JRF5]
+
−
** [http://www.uniprot.org/uniprot/P94377 P94377]
+
−
** [http://www.uniprot.org/uniprot/Q9ZKX5 Q9ZKX5]
+
−
** [http://www.uniprot.org/uniprot/Q59296 Q59296]
+
−
** [http://www.uniprot.org/uniprot/P55306 P55306]
+
−
** [http://www.uniprot.org/uniprot/P26901 P26901]
+
−
** [http://www.uniprot.org/uniprot/P14412 P14412]
+
−
** [http://www.uniprot.org/uniprot/P07145 P07145]
+
−
** [http://www.uniprot.org/uniprot/P17598 P17598]
+
−
** [http://www.uniprot.org/uniprot/Q41136 Q41136]
+
−
** [http://www.uniprot.org/uniprot/P30567 P30567]
+
−
** [http://www.uniprot.org/uniprot/P30263 P30263]
+
−
** [http://www.uniprot.org/uniprot/P29422 P29422]
+
−
** [http://www.uniprot.org/uniprot/P30266 P30266]
+
−
** [http://www.uniprot.org/uniprot/P37743 P37743]
+
−
** [http://www.uniprot.org/uniprot/P33569 P33569]
+
−
** [http://www.uniprot.org/uniprot/P18123 P18123]
+
−
** [http://www.uniprot.org/uniprot/P55303 P55303]
+
−
** [http://www.uniprot.org/uniprot/Q01297 Q01297]
+
−
** [http://www.uniprot.org/uniprot/P49318 P49318]
+
−
** [http://www.uniprot.org/uniprot/P18122 P18122]
+
−
** [http://www.uniprot.org/uniprot/P49315 P49315]
+
−
** [http://www.uniprot.org/uniprot/Q27710 Q27710]
+
−
** [http://www.uniprot.org/uniprot/P45739 P45739]
+
−
** [http://www.uniprot.org/uniprot/P0A323 P0A323]
+
−
** [http://www.uniprot.org/uniprot/P55307 P55307]
+
−
** [http://www.uniprot.org/uniprot/P55308 P55308]
+
−
** [http://www.uniprot.org/uniprot/P55305 P55305]
+
−
** [http://www.uniprot.org/uniprot/P50979 P50979]
+
−
** [http://www.uniprot.org/uniprot/Q55110 Q55110]
+
−
** [http://www.uniprot.org/uniprot/P12365 P12365]
+
−
** [http://www.uniprot.org/uniprot/P73911 P73911]
+
−
** [http://www.uniprot.org/uniprot/P77038 P77038]
+
−
** [http://www.uniprot.org/uniprot/P25819 P25819]
+
−
** [http://www.uniprot.org/uniprot/O48562 O48562]
+
−
** [http://www.uniprot.org/uniprot/Q43206 Q43206]
+
−
** [http://www.uniprot.org/uniprot/O22472 O22472]
+
−
** [http://www.uniprot.org/uniprot/P30265 P30265]
+
−
** [http://www.uniprot.org/uniprot/P48351 P48351]
+
−
** [http://www.uniprot.org/uniprot/P48352 P48352]
+
−
** [http://www.uniprot.org/uniprot/Q39633 Q39633]
+
−
** [http://www.uniprot.org/uniprot/Q39634 Q39634]
+
−
** [http://www.uniprot.org/uniprot/P32290 P32290]
+
−
** [http://www.uniprot.org/uniprot/O81336 O81336]
+
−
** [http://www.uniprot.org/uniprot/O81337 O81337]
+
−
** [http://www.uniprot.org/uniprot/P49317 P49317]
+
−
** [http://www.uniprot.org/uniprot/Q27487 Q27487]
+
−
** [http://www.uniprot.org/uniprot/Q8MYL7 Q8MYL7]
+
−
** [http://www.uniprot.org/uniprot/Q9Z598 Q9Z598]
+
−
** [http://www.uniprot.org/uniprot/O61235 O61235]
+
−
** [http://www.uniprot.org/uniprot/O33613 O33613]
+
−
** [http://www.uniprot.org/uniprot/P77948 P77948]
+
−
** [http://www.uniprot.org/uniprot/O73955 O73955]
+
−
** [http://www.uniprot.org/uniprot/O59651 O59651]
+
−
** [http://www.uniprot.org/uniprot/O31066 O31066]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.11.1.6}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.11.1.21}}
+
{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
−
{{#set: gene associated=Tiso_gene_12499|Tiso_gene_11916|Tiso_gene_5435|Tiso_gene_3006|Tiso_gene_11607|Tiso_gene_4990|Tiso_gene_15923|Tiso_gene_19683}}
+
{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
−
{{#set: in pathway=PWY-5506|DETOX1-PWY-1|DETOX1-PWY}}
+
{{#set: ec number=EC-1.2.1.88}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_6952|Tiso_gene_3513|Tiso_gene_7381|Tiso_gene_16634|Tiso_gene_18338|Tiso_gene_886|Tiso_gene_9680|Tiso_gene_18337}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}}
−
{{#set: reconstruction source=synechocystis}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:46, 21 March 2018

Reaction RXN-14116

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • delta-1-pyrroline-5-carboxylate_synthase
    • delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PROUT-PWY, L-proline degradation: PROUT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6853, ethylene biosynthesis II (microbes): PWY-6853
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14116&oldid=43637"