Difference between revisions of "Tiso gene 1960"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10642 RXN-10642] == * direction: ** REVERSIBLE * common name: ** uroporphyrinogen_chloroplast *...")
(Created page with "Category:Gene == Gene Tiso_gene_1960 == * right end position: ** 20506 * transcription direction: ** POSITIVE * left end position: ** 16698 * centisome position: ** 79.412...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10642 RXN-10642] ==
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== Gene Tiso_gene_1960 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 20506
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* common name:
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* transcription direction:
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** uroporphyrinogen_chloroplast
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** POSITIVE
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** uroporphyrinogen_decarboxylase
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* left end position:
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* ec number:
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** 16698
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** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
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* centisome position:
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** 79.412186   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 4 [[PROTON]][c] '''+''' 1 [[CPD-11444]][c] '''<=>''' 1 [[COPROPORPHYRINOGEN_I]][c] '''+''' 4 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 4 H+[c] '''+''' 1 uroporphyrinogen-I[c] '''<=>''' 1 coproporphyrinogen I[c] '''+''' 4 CO2[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_19684]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12196]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN0-5462]]
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* [[Tiso_gene_18743]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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== Pathways associated ==
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-7184]]
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***EC-NUMBER
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* [[PWY-7198]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6545]]
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* [[Tiso_gene_5173]]
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* [[PWY-7210]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_18744]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=20506}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31239 31239]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=16698}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04972 R04972]
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{{#set: centisome position=79.412186    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: common name=uroporphyrinogen_chloroplast}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: common name=uroporphyrinogen_decarboxylase}}
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{{#set: ec number=EC-4.1.1.37}}
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{{#set: gene associated=Tiso_gene_19684|Tiso_gene_18743|Tiso_gene_5173|Tiso_gene_18744}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:46, 21 March 2018

Gene Tiso_gene_1960

  • right end position:
    • 20506
  • transcription direction:
    • POSITIVE
  • left end position:
    • 16698
  • centisome position:
    • 79.412186
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1960&oldid=43702"