Difference between revisions of "Tiso gene 13520"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutaminase ** aspara...")
(Created page with "Category:Gene == Gene Tiso_gene_13520 == * right end position: ** 4471 * transcription direction: ** POSITIVE * left end position: ** 4107 * centisome position: ** 65.7751...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] ==
+
== Gene Tiso_gene_13520 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 4471
−
* common name:
+
* transcription direction:
−
** glutaminase
+
** POSITIVE
−
** asparagine_synthetase
+
* left end position:
−
** glutamine_amidotransferase
+
** 4107
−
** ferredoxin-dependent_glutamate_synthase
+
* centisome position:
−
** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
+
** 65.77515   
−
** carbamoyl_phosphate_synthetase
+
−
** asparagine_synthetase_domaincontaining_protein_putat
+
−
** glutamate_synthase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.5.1.38 EC-3.5.1.38]
+
−
** [http://enzyme.expasy.org/EC/3.5.1.2 EC-3.5.1.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ATPASE-RXN]]
−
** 1 [[WATER]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[AMMONIUM]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 H2O[c] '''+''' 1 L-glutamine[c] '''=>''' 1 L-glutamate[c] '''+''' 1 ammonium[c]
+
== Pathways associated ==
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_17058]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_3435]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_17333]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3434]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_19661]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4976]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1773]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4685]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4975]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_6657]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1154]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7495]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2973]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2581]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11511]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways ==
+
−
* [[GLUTAMINDEG-PWY]], L-glutamine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINDEG-PWY GLUTAMINDEG-PWY]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
+
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=4471}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15889 15889]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=4107}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00256 R00256]
+
{{#set: centisome position=65.77515    }}
−
* UNIPROT:
+
{{#set: reaction associated=ATPASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P10172 P10172]
+
−
** [http://www.uniprot.org/uniprot/P28492 P28492]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glutaminase}}
+
−
{{#set: common name=asparagine_synthetase}}
+
−
{{#set: common name=glutamine_amidotransferase}}
+
−
{{#set: common name=ferredoxin-dependent_glutamate_synthase}}
+
−
{{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}}
+
−
{{#set: common name=carbamoyl_phosphate_synthetase}}
+
−
{{#set: common name=asparagine_synthetase_domaincontaining_protein_putat}}
+
−
{{#set: common name=glutamate_synthase}}
+
−
{{#set: ec number=EC-3.5.1.38}}
+
−
{{#set: ec number=EC-3.5.1.2}}
+
−
{{#set: gene associated=Tiso_gene_17058|Tiso_gene_3435|Tiso_gene_17333|Tiso_gene_3434|Tiso_gene_19661|Tiso_gene_4976|Tiso_gene_1773|Tiso_gene_4685|Tiso_gene_4975|Tiso_gene_6657|Tiso_gene_1154|Tiso_gene_7495|Tiso_gene_2973|Tiso_gene_2581|Tiso_gene_11511}}
+
−
{{#set: in pathway=GLUTAMINDEG-PWY|CITRULBIO-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:48, 21 March 2018

Gene Tiso_gene_13520

  • right end position:
    • 4471
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4107
  • centisome position:
    • 65.77515
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13520&oldid=43838"