Difference between revisions of "DIPHTINE--AMMONIA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14274 CPD-14274] == * smiles: ** CCCCCCCCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHTINE--AMMONIA-LIGASE-RXN DIPHTINE--AMMONIA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14274 CPD-14274] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHTINE--AMMONIA-LIGASE-RXN DIPHTINE--AMMONIA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** CCCCCCCCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=VOMUIFOBQMYJPJ-CPIGOPAHSA-J
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* common name:
 
* common name:
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** 3-oxo-cerotoyl-CoA
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** endoribonuclease_l-psp_domain-containing_protein
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* molecular weight:
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* ec number:
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** 1156.166   
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** [http://enzyme.expasy.org/EC/6.3.1.14 EC-6.3.1.14]
 
* Synonym(s):
 
* Synonym(s):
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** 3-oxohexacosanoyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-13301]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIPHTINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DIPHTHAMIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
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* [[RXN-13296]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 ATP[c] '''+''' 1 ammonium[c] '''+''' 1 a diphthine-[translation elongation factor 2][c] '''=>''' 1 AMP[c] '''+''' 1 a diphthamide-[translation elongation factor 2][c] '''+''' 1 diphosphate[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_3764]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6482]], diphthamide biosynthesis (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6482 PWY-6482]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7546]], diphthamide biosynthesis (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7546 PWY-7546]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=71581082 71581082]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19753 19753]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=73980 73980]
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** [http://www.genome.jp/dbget-bin/www_bget?R03613 R03613]
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{{#set: smiles=CCCCCCCCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: inchi key=InChIKey=VOMUIFOBQMYJPJ-CPIGOPAHSA-J}}
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{{#set: common name=endoribonuclease_l-psp_domain-containing_protein}}
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{{#set: common name=3-oxo-cerotoyl-CoA}}
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{{#set: ec number=EC-6.3.1.14}}
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{{#set: molecular weight=1156.166    }}
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{{#set: gene associated=Tiso_gene_3764}}
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{{#set: common name=3-oxohexacosanoyl-CoA}}
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{{#set: in pathway=PWY-6482|PWY-7546}}
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{{#set: consumed by=RXN-13301}}
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{{#set: reconstruction category=annotation}}
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{{#set: produced by=RXN-13296}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:48, 21 March 2018

Reaction DIPHTINE--AMMONIA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • endoribonuclease_l-psp_domain-containing_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 ammonium[c] + 1 a diphthine-[translation elongation factor 2][c] => 1 AMP[c] + 1 a diphthamide-[translation elongation factor 2][c] + 1 diphosphate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6482, diphthamide biosynthesis (archaea): PWY-6482
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7546, diphthamide biosynthesis (eukaryotes): PWY-7546
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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