Difference between revisions of "PWY-6910"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oxidoreductase ** ORF...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** oxidoreductase
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** hydroxymethylpyrimidine salvage
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
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* Synonym(s):
 
* Synonym(s):
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** HMP salvage
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''2''' reactions in the full pathway
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** 1 [[CPD0-2352]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
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* [[PYRIMSYN3-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 a tRNA precursor with a 5' extension and a short 3' extension[c] '''+''' 1 H2O[c] '''=>''' 1 a tRNA precursor with a short 3' extension[c] '''+''' 1 a tRNA fragment[c]
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*** [[Tiso_gene_2159]]
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*** [[Tiso_gene_16224]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17192]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_2160]]
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* [[Tiso_gene_10971]]
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** 3 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14345]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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== Reaction(s) not found ==
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=OHMETPYRKIN-RXN OHMETPYRKIN-RXN]
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* [[Tiso_gene_14344]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10972]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_3898]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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* ECOCYC:
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** [http://www.uniprot.org/uniprot/Q02773 Q02773]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6910 PWY-6910]
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** [http://www.uniprot.org/uniprot/P41812 P41812]
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.uniprot.org/uniprot/P48206 P48206]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
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{{#set: common name=hydroxymethylpyrimidine salvage}}
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** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
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{{#set: common name=HMP salvage}}
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** [http://www.uniprot.org/uniprot/P29433 P29433]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P25817 P25817]
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{{#set: total reaction=2}}
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** [http://www.uniprot.org/uniprot/P22835 P22835]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P25814 P25814]
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** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
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** [http://www.uniprot.org/uniprot/Q55005 Q55005]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=oxidoreductase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-3.1.26.5}}
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{{#set: gene associated=Tiso_gene_10971|Tiso_gene_14345|Tiso_gene_14344|Tiso_gene_10972|Tiso_gene_3898}}
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{{#set: in pathway=PWY0-1479}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:48, 21 March 2018

Pathway PWY-6910

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links





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