Difference between revisions of "Tiso gene 7852"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9929 RXN-9929] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Gene == Gene Tiso_gene_7852 == * right end position: ** 1891 * transcription direction: ** POSITIVE * left end position: ** 161 * centisome position: ** 0.9847697...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9929 RXN-9929] ==
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== Gene Tiso_gene_7852 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1891
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.3.98.1 EC-1.3.98.1]
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** POSITIVE
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* left end position:
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** 161
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* centisome position:
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** 0.9847697   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACSERLY-RXN]]
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** 1 [[DI-H-OROTATE]][c] '''+''' 1 [[FUM]][c] '''=>''' 1 [[OROTATE]][c] '''+''' 1 [[SUC]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 (S)-dihydroorotate[c] '''+''' 1 fumarate[c] '''=>''' 1 orotate[c] '''+''' 1 succinate[c]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* Reaction: [[CYSTATHIONINE-BETA-SYNTHASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_5280]]
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*** Assignment: ec-number
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** [[pantograph]]-[[synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* Reaction: [[RXN-12726]]
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* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
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** Source: [[annotation-in-silico_annotation]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[orthology-athaliana]]
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* [[orthology]]:
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]:
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** Source: [[orthology-creinhardtii]]
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*** [[synechocystis]]
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* Reaction: [[SULFOCYS-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[HOMOCYSDEGR-PWY]]
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* [[CYSTSYN-PWY]]
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* [[PWY-801]]
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* [[PWY-6936]]
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* [[PWY-I9]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1891}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30062 30062]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=161}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01867 R01867]
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{{#set: centisome position=0.9847697    }}
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* UNIPROT:
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{{#set: reaction associated=ACSERLY-RXN|CYSTATHIONINE-BETA-SYNTHASE-RXN|RXN-12726|SULFOCYS-RXN}}
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** [http://www.uniprot.org/uniprot/P74782 P74782]
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{{#set: pathway associated=HOMOCYSDEGR-PWY|CYSTSYN-PWY|PWY-801|PWY-6936|PWY-I9}}
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** [http://www.uniprot.org/uniprot/Q63707 Q63707]
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** [http://www.uniprot.org/uniprot/Q48240 Q48240]
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** [http://www.uniprot.org/uniprot/P32746 P32746]
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** [http://www.uniprot.org/uniprot/Q02127 Q02127]
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** [http://www.uniprot.org/uniprot/P32748 P32748]
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** [http://www.uniprot.org/uniprot/P28294 P28294]
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** [http://www.uniprot.org/uniprot/P28272 P28272]
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** [http://www.uniprot.org/uniprot/P46539 P46539]
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** [http://www.uniprot.org/uniprot/Q9CFC9 Q9CFC9]
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** [http://www.uniprot.org/uniprot/P25996 P25996]
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** [http://www.uniprot.org/uniprot/Q58070 Q58070]
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** [http://www.uniprot.org/uniprot/P0A7E1 P0A7E1]
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** [http://www.uniprot.org/uniprot/Q9JX66 Q9JX66]
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** [http://www.uniprot.org/uniprot/Q9PPB6 Q9PPB6]
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** [http://www.uniprot.org/uniprot/Q9CFW8 Q9CFW8]
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** [http://www.uniprot.org/uniprot/P45477 P45477]
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** [http://www.uniprot.org/uniprot/P32747 P32747]
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** [http://www.uniprot.org/uniprot/P07670 P07670]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.3.98.1}}
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{{#set: gene associated=Tiso_gene_5280}}
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{{#set: in pathway=PWY-7790}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis}}
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Latest revision as of 19:48, 21 March 2018

Gene Tiso_gene_7852

  • right end position:
    • 1891
  • transcription direction:
    • POSITIVE
  • left end position:
    • 161
  • centisome position:
    • 0.9847697
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7852&oldid=43913"