Difference between revisions of "RXN-11734"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNREDUC-RXN RIBOFLAVINSYNREDUC-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** r...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11734 RXN-11734] == * direction: ** REVERSIBLE * common name: ** acyl-coenzyme_a_oxidase ** ORF...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNREDUC-RXN RIBOFLAVINSYNREDUC-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11734 RXN-11734] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** riboflavin_biosynthesis_protein
+
** acyl-coenzyme_a_oxidase
 
** ORF
 
** ORF
 +
** acyl-_dehydrogenase
 +
** acyl-CoA_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.193 EC-1.1.1.193]
+
** [http://enzyme.expasy.org/EC/1.3.8.7 EC-1.3.8.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[CPD-602]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-1086]][c]
+
** 1 [[Medium-Chain-234-Saturated-acyl-CoAs]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[medium-Chain-Trans-23-Dehydroacyl-CoA]][c] '''+''' 1 [[ETF-Reduced]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 5-amino-6-(5-phospho-D-ribosylamino)uracil[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 5-amino-6-(5-phospho-D-ribitylamino)uracil[c]
+
** 1 a medium-chain 2,3,4-saturated fatty acyl CoA[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 H+[c] '''<=>''' 1 a medium-chain trans-2,3-dehydroacyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1389]]
+
* Gene: [[Tiso_gene_6475]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_883]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_8035]]
+
* Gene: [[Tiso_gene_16631]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_17967]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18566]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5991]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[synechocystis]]
+
*** Tool: [[pathwaytools]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[athaliana]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17845 17845]
+
{{#set: common name=acyl-coenzyme_a_oxidase}}
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R03458 R03458]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=riboflavin_biosynthesis_protein}}
+
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.1.1.193}}
+
{{#set: common name=acyl-_dehydrogenase}}
−
{{#set: gene associated=Tiso_gene_1389|Tiso_gene_8035}}
+
{{#set: common name=acyl-CoA_dehydrogenase}}
−
{{#set: in pathway=RIBOSYN2-PWY}}
+
{{#set: ec number=EC-1.3.8.7}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_6475|Tiso_gene_883|Tiso_gene_16631|Tiso_gene_17967|Tiso_gene_18566|Tiso_gene_5991}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 19:49, 21 March 2018

Reaction RXN-11734

  • direction:
    • REVERSIBLE
  • common name:
    • acyl-coenzyme_a_oxidase
    • ORF
    • acyl-_dehydrogenase
    • acyl-CoA_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11734&oldid=43931"