Difference between revisions of "RXN-12560"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12560 RXN-12560] == * direction: ** REVERSIBLE * common name: ** polyketide_synthase * ec numbe...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9655 RXN-9655] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12560 RXN-12560] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
 
** polyketide_synthase
 
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.1.1.36 EC-1.1.1.36]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** β-hydroxyacyl-ACP dehydrase
 
−
** HDDase
 
−
** β-hydroxyacyl-acyl carrier protein dehydratase
 
−
** FabA
 
−
** β-hydroxydecanoyl thiol ester dehydrase
 
−
** β-hydroxydecanoate dehydrase
 
−
** D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[NADP]][c] '''+''' 1 [[CPD-13533]][c] '''<=>''' 1 [[CPD-13534]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxydecanoyl-[acp][c] '''=>''' 1 a (2E)-dec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
+
** 1 NADP+[c] '''+''' 1 (R)-3-hydroxyvaleryl-CoA[c] '''<=>''' 1 &beta;-ketovaleryl-CoA[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_135]]
+
* Gene: [[Tiso_gene_5424]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_10876]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_6884]]
+
* Gene: [[Tiso_gene_136]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_136]]
+
* Gene: [[Tiso_gene_5425]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10876]]
+
* Gene: [[Tiso_gene_500]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_13394]]
+
* Gene: [[Tiso_gene_6562]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6563]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY0-862]], (5Z)-dodec-5-enoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[annotation]]
−
** [[primary_network]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[annotation]]:
+
*** Tool: [[pathwaytools]]
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
 
{{#set: common name=polyketide_synthase}}
 
{{#set: common name=polyketide_synthase}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: ec number=EC-1.1.1.36}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: gene associated=Tiso_gene_5424|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_5425|Tiso_gene_500|Tiso_gene_6562|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_6563}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: in pathway=}}
−
{{#set: common name=(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|&beta;-hydroxyacyl-ACP dehydrase|HDDase|&beta;-hydroxyacyl-acyl carrier protein dehydratase|FabA|&beta;-hydroxydecanoyl thiol ester dehydrase|&beta;-hydroxydecanoate dehydrase|D-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase}}
+
−
{{#set: gene associated=Tiso_gene_135|Tiso_gene_500|Tiso_gene_6884|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_13394}}
+
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY0-862}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:49, 21 March 2018

Reaction RXN-12560

  • direction:
    • REVERSIBLE
  • common name:
    • polyketide_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADP+[c] + 1 (R)-3-hydroxyvaleryl-CoA[c] <=> 1 β-ketovaleryl-CoA[c] + 1 NADPH[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12560&oldid=43990"