Difference between revisions of "5-NUCLEOTID-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHYTOSPINGOSINE PHYTOSPINGOSINE] == * smiles: ** CCCCCCCCCCCCCCC(O)C(C(CO)[N+])O * inchi key: *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_-nucleotidase...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHYTOSPINGOSINE PHYTOSPINGOSINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] ==
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* smiles:
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* direction:
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** CCCCCCCCCCCCCCC(O)C(C(CO)[N+])O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=AERBNCYCJBRYDG-KSZLIROESA-O
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* common name:
 
* common name:
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** phytosphingosine
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** 5_-nucleotidase
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* molecular weight:
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** 5_deoxy_cytosolic_type_c_protein
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** 318.519   
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
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** 4-hydroxysphinganine
 
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** D-ribo-4-hydroxysphinganine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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== Reaction(s) of unknown directionality ==
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** 1 [[WATER]][c] '''+''' 1 [[Ribonucleoside-Monophosphates]][c] '''=>''' 1 [[Ribonucleosides]][c] '''+''' 1 [[Pi]][c]
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* [[CERAMIDASE-YEAST-RXN]]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 a ribonucleoside 5'-monophosphate[c] '''=>''' 1 a ribonucleoside[c] '''+''' 1 phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_14434]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6640]]
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14435]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_6988]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14246]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIPID_MAPS : LMSP01030001
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R07297 R07297]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=56927898 56927898]
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* UNIPROT:
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P06196 P06196]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=64124 64124]
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** [http://www.uniprot.org/uniprot/P21588 P21588]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/O34313 O34313]
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** [http://www.genome.jp/dbget-bin/www_bget?C12144 C12144]
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** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
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* HMDB : HMDB04610
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** [http://www.uniprot.org/uniprot/O29385 O29385]
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{{#set: smiles=CCCCCCCCCCCCCCC(O)C(C(CO)[N+])O}}
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** [http://www.uniprot.org/uniprot/P44569 P44569]
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{{#set: inchi key=InChIKey=AERBNCYCJBRYDG-KSZLIROESA-O}}
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** [http://www.uniprot.org/uniprot/O83142 O83142]
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{{#set: common name=phytosphingosine}}
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** [http://www.uniprot.org/uniprot/P49902 P49902]
−
{{#set: molecular weight=318.519    }}
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** [http://www.uniprot.org/uniprot/P22848 P22848]
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{{#set: common name=4-hydroxysphinganine|D-ribo-4-hydroxysphinganine}}
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** [http://www.uniprot.org/uniprot/Q05927 Q05927]
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{{#set: consumed or produced by=CERAMIDASE-YEAST-RXN}}
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** [http://www.uniprot.org/uniprot/P21589 P21589]
 +
** [http://www.uniprot.org/uniprot/P29240 P29240]
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** [http://www.uniprot.org/uniprot/P07024 P07024]
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{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=5_-nucleotidase}}
 +
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-3.1.3.5}}
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{{#set: gene associated=Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_14434|Tiso_gene_6640|Tiso_gene_14435|Tiso_gene_6988|Tiso_gene_14246}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:50, 21 March 2018

Reaction 5-NUCLEOTID-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_-nucleotidase
    • 5_deoxy_cytosolic_type_c_protein
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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