Difference between revisions of "Tiso gene 14998"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROISOM-RXN GALACTUROISOM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** bh0493_...")
(Created page with "Category:Gene == Gene Tiso_gene_14998 == * right end position: ** 5195 * transcription direction: ** POSITIVE * left end position: ** 4276 * centisome position: ** 80.7097...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROISOM-RXN GALACTUROISOM-RXN] ==
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== Gene Tiso_gene_14998 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 5195
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** bh0493_protein
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* left end position:
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* ec number:
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** 4276
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** [http://enzyme.expasy.org/EC/5.3.1.12 EC-5.3.1.12]
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* centisome position:
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** 80.7097   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.5.1.27-RXN]]
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** 1 [[CPD-15633]][c] '''<=>''' 1 [[D-TAGATURONATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 aldehydo-D-galacturonate[c] '''<=>''' 1 D-tagaturonate[c]
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* Reaction: [[3.5.1.88-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[FORMYLMETHIONINE-DEFORMYLASE-RXN]]
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* [[Tiso_gene_19097]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_8329]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7248]], pectin degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7248 PWY-7248]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[GALACTUROCAT-PWY]], D-galacturonate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROCAT-PWY GALACTUROCAT-PWY]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5195}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27702 27702]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=4276}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01983 R01983]
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{{#set: centisome position=80.7097    }}
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* UNIPROT:
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{{#set: reaction associated=3.5.1.27-RXN|3.5.1.88-RXN|FORMYLMETHIONINE-DEFORMYLASE-RXN}}
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** [http://www.uniprot.org/uniprot/P0A8G3 P0A8G3]
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** [http://www.uniprot.org/uniprot/Q9CF53 Q9CF53]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=bh0493_protein}}
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{{#set: ec number=EC-5.3.1.12}}
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{{#set: gene associated=Tiso_gene_19097|Tiso_gene_8329}}
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{{#set: in pathway=PWY-7248|GALACTUROCAT-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:51, 21 March 2018

Gene Tiso_gene_14998

  • right end position:
    • 5195
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4276
  • centisome position:
    • 80.7097
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14998&oldid=44215"