Difference between revisions of "ORNCARBAMTRANSFER-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] == * direction: ** REVERSIBLE * common name: ** cytoplasmic...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** cytoplasmic
 
−
** pgm_pmm
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.4.2.2 EC-5.4.2.2]
+
** [http://enzyme.expasy.org/EC/2.1.3.3 EC-2.1.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLC-1-P]][c] '''<=>''' 1 [[D-glucopyranose-6-phosphate]][c]
+
** 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 &alpha;-D-glucopyranose 1-phosphate[c] '''<=>''' 1 D-glucopyranose 6-phosphate[c]
+
** 1 carbamoyl phosphate[c] '''+''' 1 L-ornithine[c] '''<=>''' 1 L-citrulline[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4816]]
+
* Gene: [[Tiso_gene_18444]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_13477]]
+
** Source: [[orthology-athaliana]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
+
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384]
+
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
+
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7343]], UDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7343 PWY-7343]
+
* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
+
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-622]], starch biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-622 PWY-622]
+
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6731]], starch degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6731 PWY-6731]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
+
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6737]], starch degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6737 PWY-6737]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGENSYNTH-PWY GLYCOGENSYNTH-PWY]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-5941]], glycogen degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5941 PWY-5941]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-5940]], streptomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940]
+
−
** '''2''' reactions found over '''18''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[manual]]:
+
* Category: [[orthology]]
−
** [[primary_network]]
+
** Source: [[orthology-athaliana]]
−
* [[annotation]]:
+
*** Tool: [[pantograph]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23536 23536]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19513 19513]
−
* PIR:
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41801 A41801]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A53614 A53614]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B53614 B53614]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70650 E70650]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64803 G64803]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81947 G81947]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39487 I39487]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I41215 I41215]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRB PMRB]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRBI PMRBI]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRT PMRT]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S10741 S10741]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39397 S39397]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41199 S41199]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41200 S41200]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76847 S76847]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78440 S78440]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04326 T04326]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04327 T04327]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T12574 T12574]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52656 T52656]
+
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00959 R00959]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P36871 P36871]
+
** [http://www.uniprot.org/uniprot/Q58291 Q58291]
−
** [http://www.uniprot.org/uniprot/P40390 P40390]
+
** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
−
** [http://www.uniprot.org/uniprot/P40391 P40391]
+
** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
−
** [http://www.uniprot.org/uniprot/P95090 P95090]
+
** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
−
** [http://www.uniprot.org/uniprot/P36938 P36938]
+
** [http://www.uniprot.org/uniprot/P11727 P11727]
−
** [http://www.uniprot.org/uniprot/P57002 P57002]
+
** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
−
** [http://www.uniprot.org/uniprot/P38569 P38569]
+
** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
−
** [http://www.uniprot.org/uniprot/P31120 P31120]
+
** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
−
** [http://www.uniprot.org/uniprot/P00949 P00949]
+
** [http://www.uniprot.org/uniprot/P44770 P44770]
−
** [http://www.uniprot.org/uniprot/P38652 P38652]
+
** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
−
** [http://www.uniprot.org/uniprot/Q7M2K5 Q7M2K5]
+
** [http://www.uniprot.org/uniprot/P11066 P11066]
−
** [http://www.uniprot.org/uniprot/Q16106 Q16106]
+
** [http://www.uniprot.org/uniprot/P11803 P11803]
−
** [http://www.uniprot.org/uniprot/P33401 P33401]
+
** [http://www.uniprot.org/uniprot/P18186 P18186]
−
** [http://www.uniprot.org/uniprot/P37012 P37012]
+
** [http://www.uniprot.org/uniprot/P05150 P05150]
−
** [http://www.uniprot.org/uniprot/P74643 P74643]
+
** [http://www.uniprot.org/uniprot/P14995 P14995]
−
** [http://www.uniprot.org/uniprot/Q51847 Q51847]
+
** [http://www.uniprot.org/uniprot/P06960 P06960]
−
** [http://www.uniprot.org/uniprot/P93804 P93804]
+
** [http://www.uniprot.org/uniprot/P04391 P04391]
−
** [http://www.uniprot.org/uniprot/P93805 P93805]
+
** [http://www.uniprot.org/uniprot/P00480 P00480]
−
** [http://www.uniprot.org/uniprot/P93262 P93262]
+
** [http://www.uniprot.org/uniprot/P11725 P11725]
−
** [http://www.uniprot.org/uniprot/Q9SCY0 Q9SCY0]
+
** [http://www.uniprot.org/uniprot/P21302 P21302]
 +
** [http://www.uniprot.org/uniprot/P11724 P11724]
 +
** [http://www.uniprot.org/uniprot/P08308 P08308]
 +
** [http://www.uniprot.org/uniprot/P68747 P68747]
 +
** [http://www.uniprot.org/uniprot/P00481 P00481]
 +
** [http://www.uniprot.org/uniprot/P31317 P31317]
 +
** [http://www.uniprot.org/uniprot/Q01322 Q01322]
 +
** [http://www.uniprot.org/uniprot/Q01323 Q01323]
 +
** [http://www.uniprot.org/uniprot/Q01324 Q01324]
 +
** [http://www.uniprot.org/uniprot/Q01326 Q01326]
 +
** [http://www.uniprot.org/uniprot/Q01325 Q01325]
 +
** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
 +
** [http://www.uniprot.org/uniprot/Q01327 Q01327]
 +
** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
 +
** [http://www.uniprot.org/uniprot/Q02047 Q02047]
 +
** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
 +
** [http://www.uniprot.org/uniprot/Q48296 Q48296]
 +
** [http://www.uniprot.org/uniprot/P75473 P75473]
 +
** [http://www.uniprot.org/uniprot/Q49080 Q49080]
 +
** [http://www.uniprot.org/uniprot/Q43814 Q43814]
 +
** [http://www.uniprot.org/uniprot/O53089 O53089]
 +
** [http://www.uniprot.org/uniprot/O50039 O50039]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=cytoplasmic}}
+
{{#set: ec number=EC-2.1.3.3}}
−
{{#set: common name=pgm_pmm}}
+
{{#set: gene associated=Tiso_gene_18444}}
−
{{#set: ec number=EC-5.4.2.2}}
+
{{#set: in pathway=ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|CITRULLINE-DEG-PWY|CITRULBIO-PWY}}
−
{{#set: gene associated=Tiso_gene_4816|Tiso_gene_13477}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: in pathway=PWY-7238|PWY-5384|GLYCOCAT-PWY|PWY-7343|PWY-3801|PWY-622|PWY-6731|GLUCOSE1PMETAB-PWY|PWY-6737|PWY-6317|PWY-2723|GLYCOGENSYNTH-PWY|PWY-5661|PWY66-422|PWY-5941|PWY-5940}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:52, 21 March 2018

Reaction ORNCARBAMTRANSFER-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 carbamoyl phosphate[c] + 1 L-ornithine[c] <=> 1 L-citrulline[c] + 1 H+[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • CITRULLINE-DEG-PWY, L-citrulline degradation: CITRULLINE-DEG-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ORNCARBAMTRANSFER-RXN&oldid=44328"