Difference between revisions of "Tiso gene 3498"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9534 RXN-9534] == * direction: ** LEFT-TO-RIGHT * common name: ** trans dodec-2-enoyl-[acyl-car...")
(Created page with "Category:Gene == Gene Tiso_gene_3498 == * right end position: ** 5306 * transcription direction: ** POSITIVE * left end position: ** 61 * centisome position: ** 0.16895635...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9534 RXN-9534] ==
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== Gene Tiso_gene_3498 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5306
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* common name:
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* transcription direction:
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** trans dodec-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)
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** POSITIVE
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** polyketide_synthase
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* left end position:
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* ec number:
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** 61
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** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.3.1.39 EC-1.3.1.39]
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** 0.16895635   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DNA-LIGASE-ATP-RXN]]
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** 1 [[Dodec-2-enoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a (2E)-dodec-2-enoyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 a dodecanoyl-[acp][c] '''+''' 1 NADP+[c]
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* Reaction: [[RXN-17917]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-17918]]
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* [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-17919]]
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* [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10778]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5306}}
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{{#set: common name=trans dodec-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: left end position=61}}
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{{#set: ec number=EC-1.3.1.10}}
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{{#set: centisome position=0.16895635    }}
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{{#set: ec number=EC-1.3.1.39}}
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{{#set: reaction associated=DNA-LIGASE-ATP-RXN|RXN-17917|RXN-17918|RXN-17919}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_135|Tiso_gene_13394|Tiso_gene_10778}}
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{{#set: in pathway=PWY-5994}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:53, 21 March 2018

Gene Tiso_gene_3498

  • right end position:
    • 5306
  • transcription direction:
    • POSITIVE
  • left end position:
    • 61
  • centisome position:
    • 0.16895635
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3498&oldid=44432"