Difference between revisions of "RXNN-404"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_1104 == * left end position: ** 24677 * transcription direction: ** POSITIVE * right end position: ** 26030 * centisome position: ** 94.780...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] == * direction: ** LEFT-TO-RIGHT * common name: ** amidase * ec number: ** [http...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] == |
| − | * | + | * direction: |
| − | + | ** LEFT-TO-RIGHT | |
| − | + | * common name: | |
| − | ** | + | ** amidase |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4] |
| − | * | + | |
| − | ** | + | |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | * | + | ** 1 [[CPD-237]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c] |
| − | ** | + | * With common name(s): |
| − | + | ** 1 indole-3-acetamide[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c] | |
| − | * [[ | + | |
| − | ** in-silico_annotation | + | == Genes associated with this reaction == |
| − | *** | + | Genes have been associated with this reaction based on different elements listed below. |
| − | * [[ | + | * Gene: [[Tiso_gene_13682]] |
| − | ** in- | + | ** Source: [[annotation-in-silico_annotation]] |
| − | ** | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | * [[ | + | == Pathways == |
| − | ** in | + | * [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581] |
| − | + | ** '''3''' reactions found over '''13''' reactions in the full pathway | |
| − | == | + | * [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5025 PWY-5025] |
| − | * [[ | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
| − | * | + | * [[PWY-3161]], indole-3-acetate biosynthesis III (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3161 PWY-3161] |
| − | * [[ | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
| − | * [[ | + | == Reconstruction information == |
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | + | * RHEA: | |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34371 34371] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03096 R03096] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: pathway | + | {{#set: common name=amidase}} |
| + | {{#set: ec number=EC-3.5.1.4}} | ||
| + | {{#set: gene associated=Tiso_gene_13682}} | ||
| + | {{#set: in pathway=PWY-581|PWY-5025|PWY-3161}} | ||
| + | {{#set: reconstruction category=annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation}} | ||
| + | {{#set: reconstruction tool=pathwaytools}} | ||
Latest revision as of 19:54, 21 March 2018
Contents
Reaction RXNN-404
- direction:
- LEFT-TO-RIGHT
- common name:
- amidase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CPD-237[c] + 1 WATER[c] => 1 AMMONIUM[c] + 1 INDOLE_ACETATE_AUXIN[c]
- With common name(s):
- 1 indole-3-acetamide[c] + 1 H2O[c] => 1 ammonium[c] + 1 indole-3-acetate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_13682
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
Pathways
- PWY-581, indole-3-acetate biosynthesis II: PWY-581
- 3 reactions found over 13 reactions in the full pathway
- PWY-5025, indole-3-acetate biosynthesis IV (bacteria): PWY-5025
- 2 reactions found over 2 reactions in the full pathway
- PWY-3161, indole-3-acetate biosynthesis III (bacteria): PWY-3161
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
