Difference between revisions of "Tiso gene 19350"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** mitochondrial_car...")
(Created page with "Category:Gene == Gene Tiso_gene_19350 == * right end position: ** 2388 * transcription direction: ** POSITIVE * left end position: ** 639 * centisome position: ** 26.69172...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] ==
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== Gene Tiso_gene_19350 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 2388
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** mitochondrial_carrier_protein
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* left end position:
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* ec number:
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** 639
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** [http://enzyme.expasy.org/EC/1.1.1.34 EC-1.1.1.34]
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* centisome position:
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** 26.691729   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 2 [[NADP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 2 [[NADPH]][c] '''+''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 2 NADP+[c] '''+''' 1 coenzyme A[c] '''+''' 1 (R)-mevalonate[c] '''<=>''' 2 H+[c] '''+''' 2 NADPH[c] '''+''' 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_16182]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12196]]
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* [[Tiso_gene_17889]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN0-5462]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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*** Assignment: ec-number
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Pathways associated ==
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* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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* [[PWY-7184]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7198]]
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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* [[PWY-6545]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7210]]
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* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2388}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15989 15989]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=639}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
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{{#set: centisome position=26.691729    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P16393 P16393]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P14891 P14891]
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** [http://www.uniprot.org/uniprot/P16237 P16237]
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** [http://www.uniprot.org/uniprot/P20715 P20715]
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** [http://www.uniprot.org/uniprot/Q59468 Q59468]
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** [http://www.uniprot.org/uniprot/Q01237 Q01237]
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** [http://www.uniprot.org/uniprot/Q61671 Q61671]
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** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
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** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
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** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
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** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
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** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
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** [http://www.uniprot.org/uniprot/P04035 P04035]
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** [http://www.uniprot.org/uniprot/P00347 P00347]
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** [http://www.uniprot.org/uniprot/P29058 P29058]
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** [http://www.uniprot.org/uniprot/P29057 P29057]
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** [http://www.uniprot.org/uniprot/Q12577 Q12577]
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** [http://www.uniprot.org/uniprot/Q12649 Q12649]
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** [http://www.uniprot.org/uniprot/Q00583 Q00583]
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** [http://www.uniprot.org/uniprot/Q01559 Q01559]
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** [http://www.uniprot.org/uniprot/P48022 P48022]
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** [http://www.uniprot.org/uniprot/Q43825 Q43825]
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** [http://www.uniprot.org/uniprot/Q43826 Q43826]
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** [http://www.uniprot.org/uniprot/P14773 P14773]
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** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
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** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
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** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
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** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
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** [http://www.uniprot.org/uniprot/P48019 P48019]
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** [http://www.uniprot.org/uniprot/Q41454 Q41454]
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** [http://www.uniprot.org/uniprot/Q42506 Q42506]
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** [http://www.uniprot.org/uniprot/Q41455 Q41455]
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** [http://www.uniprot.org/uniprot/Q41456 Q41456]
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** [http://www.uniprot.org/uniprot/Q41458 Q41458]
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** [http://www.uniprot.org/uniprot/P48020 P48020]
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** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
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** [http://www.uniprot.org/uniprot/Q42466 Q42466]
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** [http://www.uniprot.org/uniprot/O48624 O48624]
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** [http://www.uniprot.org/uniprot/O04188 O04188]
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** [http://www.uniprot.org/uniprot/O24594 O24594]
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** [http://www.uniprot.org/uniprot/Q41438 Q41438]
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** [http://www.uniprot.org/uniprot/O64966 O64966]
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** [http://www.uniprot.org/uniprot/O64967 O64967]
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** [http://www.uniprot.org/uniprot/Q03163 Q03163]
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** [http://www.uniprot.org/uniprot/Q39628 Q39628]
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** [http://www.uniprot.org/uniprot/P93514 P93514]
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** [http://www.uniprot.org/uniprot/O08424 O08424]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=mitochondrial_carrier_protein}}
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{{#set: ec number=EC-1.1.1.34}}
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{{#set: gene associated=Tiso_gene_16182|Tiso_gene_17889}}
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{{#set: in pathway=PWY-922|PWY-6174|PWY-7391|PWY-7524}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:54, 21 March 2018

Gene Tiso_gene_19350

  • right end position:
    • 2388
  • transcription direction:
    • POSITIVE
  • left end position:
    • 639
  • centisome position:
    • 26.691729
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19350&oldid=44545"