Difference between revisions of "RXN-13297"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13297 RXN-13297] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13297 RXN-13297] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ORF
 
−
** prolyl-trna_synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.15 EC-6.1.1.15]
+
** [http://enzyme.expasy.org/EC/2.3.1.199 EC-2.3.1.199]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[PRO-tRNAs]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[MALONYL-COA]][c] '''+''' 1 [[CPD-10279]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-14273]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a tRNApro[c] '''+''' 1 L-proline[c] '''=>''' 1 an L-prolyl-[tRNApro][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
+
** 1 malonyl-CoA[c] '''+''' 1 docosanoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 3-oxo-lignoceroyl-CoA[c] '''+''' 1 coenzyme A[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_11974]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_14791]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** EXPERIMENTAL_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''16''' reactions found over '''16''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14305 14305]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O51363 O51363]
 
−
** [http://www.uniprot.org/uniprot/O58734 O58734]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 
−
** [http://www.uniprot.org/uniprot/P43830 P43830]
 
−
** [http://www.uniprot.org/uniprot/P47525 P47525]
 
−
** [http://www.uniprot.org/uniprot/O26708 O26708]
 
−
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 
−
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 
−
** [http://www.uniprot.org/uniprot/P56124 P56124]
 
−
** [http://www.uniprot.org/uniprot/O83195 O83195]
 
−
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 
−
** [http://www.uniprot.org/uniprot/O31755 O31755]
 
−
** [http://www.uniprot.org/uniprot/P36431 P36431]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 
−
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 
−
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 
−
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 
−
** [http://www.uniprot.org/uniprot/P75382 P75382]
 
−
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 
−
** [http://www.uniprot.org/uniprot/P07814 P07814]
 
−
** [http://www.uniprot.org/uniprot/P16659 P16659]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.3.1.199}}
−
{{#set: common name=prolyl-trna_synthetase}}
+
{{#set: in pathway=PWY-7036}}
−
{{#set: ec number=EC-6.1.1.15}}
+
−
{{#set: gene associated=Tiso_gene_11974|Tiso_gene_14791}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:54, 21 March 2018

Reaction RXN-13297

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7036, very long chain fatty acid biosynthesis II: PWY-7036
    • 16 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13297&oldid=44551"