Difference between revisions of "Tiso gene 15327"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5234 RXN0-5234] == * direction: ** LEFT-TO-RIGHT * common name: ** serine_hydroxymethyltransfe...")
(Created page with "Category:Gene == Gene Tiso_gene_15327 == * right end position: ** 1959 * transcription direction: ** POSITIVE * left end position: ** 24 * centisome position: ** 0.4711425...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5234 RXN0-5234] ==
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== Gene Tiso_gene_15327 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1959
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* common name:
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* transcription direction:
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** serine_hydroxymethyltransferase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.1.2 EC-4.1.2]
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** 24
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* centisome position:
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** 0.47114253   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACACT]]
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** 1 [[ALLO-THR]][c] '''=>''' 1 [[GLY]][c] '''+''' 1 [[ACETALD]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** 1 DL-allothreonine[c] '''=>''' 1 glycine[c] '''+''' 1 acetaldehyde[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-athaliana]]
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* [[Tiso_gene_18652]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***AUTOMATED-NAME-MATCH
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* Reaction: [[KETOACYLCOATHIOL-RXN]]
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* [[Tiso_gene_7776]]
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** Source: [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[METHYLACETOACETYLCOATHIOL-RXN]]
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* [[Tiso_gene_16153]]
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** Source: [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[RXN-10699]]
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***AUTOMATED-NAME-MATCH
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** Source: [[annotation-experimental_annotation]]
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== Pathways ==
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*** Assignment: ec-number
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== Reconstruction information  ==
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* Reaction: [[RXN-10700]]
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* [[annotation]]:
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** Source: [[annotation-experimental_annotation]]
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** [[pathwaytools]]:
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*** Assignment: ec-number
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*** [[experimental_annotation]]
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* Reaction: [[RXN-10701]]
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*** [[in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-11246]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12561]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12565]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-12710]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-13617]]
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** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14268]]
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** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
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* Reaction: [[RXN-14274]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14277]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14394]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14774]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14788]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14793]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14799]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14803]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16137]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17116]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17778]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17782]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17787]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17791]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17795]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17799]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
== Pathways associated ==
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* [[P162-PWY]]
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* [[PWY-5177]]
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* [[PWY-6583]]
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* [[P163-PWY]]
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* [[PWY-6883]]
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* [[PWY-5676]]
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* [[PWY-5136]]
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* [[PWY-7778]]
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* [[PWY-7779]]
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* [[PWY-6588]]
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* [[PWY-7288]]
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* [[PWY-6174]]
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* [[PWY-7340]]
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* [[PWY-7337]]
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* [[PWY-7094]]
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* [[PWY-7654]]
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* [[PWY66-391]]
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* [[PWY-5789]]
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* [[FAO-PWY]]
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* [[PWY-6876]]
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* [[CENTFERM-PWY]]
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* [[PWY-6945]]
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* [[PWY-7391]]
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* [[PWY-5741]]
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* [[PWY-5109]]
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* [[PWY1-3]]
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* [[ACETOACETATE-DEG-PWY]]
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* [[PWY-6948]]
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* [[PWY-7726]]
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* [[PWY66-367]]
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* [[PWY-6435]]
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* [[ILEUDEG-PWY]]
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* [[PWY-7216]]
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* [[PWY-922]]
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* [[PWY-7606]]
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* [[PWY-7338]]
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* [[PWY66-368]]
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* [[PWY-7339]]
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* [[PWY-6946]]
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* [[PWY-735]]
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* [[PWY-7401]]
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* [[PWY-6863]]
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* [[PWY-7524]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=1959}}
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{{#set: common name=serine_hydroxymethyltransferase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: ec number=EC-4.1.2}}
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{{#set: left end position=24}}
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{{#set: gene associated=Tiso_gene_18652|Tiso_gene_7776|Tiso_gene_16153}}
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{{#set: centisome position=0.47114253    }}
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{{#set: in pathway=}}
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{{#set: reaction associated=ACACT|ACETYL-COA-ACETYLTRANSFER-RXN|KETOACYLCOATHIOL-RXN|METHYLACETOACETYLCOATHIOL-RXN|RXN-10699|RXN-10700|RXN-10701|RXN-11246|RXN-12561|RXN-12565|RXN-12710|RXN-13617|RXN-14268|RXN-14274|RXN-14277|RXN-14394|RXN-14774|RXN-14788|RXN-14793|RXN-14799|RXN-14803|RXN-16137|RXN-17116|RXN-17778|RXN-17782|RXN-17787|RXN-17791|RXN-17795|RXN-17799}}
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{{#set: reconstruction category=annotation}}
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{{#set: pathway associated=P162-PWY|PWY-5177|PWY-6583|P163-PWY|PWY-6883|PWY-5676|PWY-5136|PWY-7778|PWY-7779|PWY-6588|PWY-7288|PWY-6174|PWY-7340|PWY-7337|PWY-7094|PWY-7654|PWY66-391|PWY-5789|FAO-PWY|PWY-6876|CENTFERM-PWY|PWY-6945|PWY-7391|PWY-5741|PWY-5109|PWY1-3|ACETOACETATE-DEG-PWY|PWY-6948|PWY-7726|PWY66-367|PWY-6435|ILEUDEG-PWY|PWY-7216|PWY-922|PWY-7606|PWY-7338|PWY66-368|PWY-7339|PWY-6946|PWY-735|PWY-7401|PWY-6863|PWY-7524}}
−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:56, 21 March 2018

Gene Tiso_gene_15327

  • right end position:
    • 1959
  • transcription direction:
    • POSITIVE
  • left end position:
    • 24
  • centisome position:
    • 0.47114253
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15327&oldid=44754"