Difference between revisions of "Tiso gene 6065"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-469 RXN66-469] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methyl-branched fatty acy...")
(Created page with "Category:Gene == Gene Tiso_gene_6065 == * right end position: ** 8254 * transcription direction: ** POSITIVE * left end position: ** 5830 * centisome position: ** 46.24048...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-469 RXN66-469] ==
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== Gene Tiso_gene_6065 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8254
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* common name:
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* transcription direction:
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** 3-methyl-branched fatty acyl-CoA ligase
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** POSITIVE
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** polyketide_synthase
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* left end position:
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** long_chain_acyl-_synthetase
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** 5830
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** acyl-_synthetase
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* centisome position:
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** ORF
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** 46.240482   
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASPARAGINE--TRNA-LIGASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[3-Methyl-Saturated-Fatty-Acids]][c] '''=>''' 1 [[3-Methyl-Saturated-Fatty-Acyl-CoA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 a 3-methyl-branched 2,3,4-saturated fatty acid[c] '''=>''' 1 a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[TRNA-CHARGING-PWY]]
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY66-387]], fatty acid α-oxidation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-387 PWY66-387]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=8254}}
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{{#set: common name=3-methyl-branched fatty acyl-CoA ligase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: left end position=5830}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: centisome position=46.240482    }}
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{{#set: common name=acyl-_synthetase}}
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{{#set: reaction associated=ASPARAGINE--TRNA-LIGASE-RXN}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_9394|Tiso_gene_348|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_4191|Tiso_gene_136}}
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{{#set: in pathway=PWY66-387}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:56, 21 March 2018

Gene Tiso_gene_6065

  • right end position:
    • 8254
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5830
  • centisome position:
    • 46.240482
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6065&oldid=44768"