Difference between revisions of "Tiso gene 9179"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Gene == Gene Tiso_gene_9179 == * right end position: ** 3240 * transcription direction: ** POSITIVE * left end position: ** 631 * centisome position: ** 6.621891...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGININE--TRNA-LIGASE-RXN ARGININE--TRNA-LIGASE-RXN] ==
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== Gene Tiso_gene_9179 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3240
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* common name:
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* transcription direction:
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** arginyl-trna_synthetase
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** POSITIVE
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** arginine-trna_ligase
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* left end position:
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* ec number:
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** 631
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** [http://enzyme.expasy.org/EC/6.1.1.19 EC-6.1.1.19]
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* centisome position:
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** 6.621891   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[F16ALDOLASE-RXN]]
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** 1 [[ARG-tRNAs]][c] '''+''' 1 [[ARG]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[AMP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a tRNAarg[c] '''+''' 1 L-arginine[c] '''+''' 1 ATP[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-arginyl-[tRNAarg][c] '''+''' 1 AMP[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-8631]]
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* [[Tiso_gene_16360]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[SEDOBISALDOL-RXN]]
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* [[Tiso_gene_12997]]
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** Source: [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-1042]]
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** EXPERIMENTAL_ANNOTATION
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* [[P341-PWY]]
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***EC-NUMBER
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* [[PWY66-399]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY66-373]]
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== Pathways  ==
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* [[SUCSYN-PWY]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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* [[GLYCOLYSIS]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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* [[PWY-7385]]
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== Reconstruction information  ==
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* [[ANAGLYCOLYSIS-PWY]]
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* [[orthology]]:
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* [[CALVIN-PWY]]
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** [[pantograph]]:
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* [[PWY0-1517]]
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*** [[esiliculosus]]
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* [[PWY-1861]]
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* [[annotation]]:
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* [[PWY-6142]]
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** [[pathwaytools]]:
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* [[PWY-5484]]
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*** [[experimental_annotation]]
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* [[P185-PWY]]
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*** [[in-silico_annotation]]
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* [[GLUCONEO-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3240}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20301 20301]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=631}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
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{{#set: centisome position=6.621891    }}
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* UNIPROT:
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{{#set: reaction associated=F16ALDOLASE-RXN|RXN-8631|SEDOBISALDOL-RXN}}
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** [http://www.uniprot.org/uniprot/P40329 P40329]
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-399|PWY66-373|SUCSYN-PWY|GLYCOLYSIS|PWY-7385|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY0-1517|PWY-1861|PWY-6142|PWY-5484|P185-PWY|GLUCONEO-PWY}}
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** [http://www.uniprot.org/uniprot/P35868 P35868]
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** [http://www.uniprot.org/uniprot/P43832 P43832]
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** [http://www.uniprot.org/uniprot/O51540 O51540]
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** [http://www.uniprot.org/uniprot/O67068 O67068]
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** [http://www.uniprot.org/uniprot/O59147 O59147]
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** [http://www.uniprot.org/uniprot/O83803 O83803]
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** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
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** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
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** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
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** [http://www.uniprot.org/uniprot/P46906 P46906]
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** [http://www.uniprot.org/uniprot/Q57689 Q57689]
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** [http://www.uniprot.org/uniprot/O27496 O27496]
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** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
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** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
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** [http://www.uniprot.org/uniprot/P56128 P56128]
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** [http://www.uniprot.org/uniprot/P47618 P47618]
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** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
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** [http://www.uniprot.org/uniprot/Q08888 Q08888]
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** [http://www.uniprot.org/uniprot/P54136 P54136]
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** [http://www.uniprot.org/uniprot/P38714 P38714]
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** [http://www.uniprot.org/uniprot/Q05506 Q05506]
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** [http://www.uniprot.org/uniprot/P75222 P75222]
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** [http://www.uniprot.org/uniprot/P11875 P11875]
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** [http://www.uniprot.org/uniprot/O23247 O23247]
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** [http://www.uniprot.org/uniprot/O74781 O74781]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=arginyl-trna_synthetase}}
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{{#set: common name=arginine-trna_ligase}}
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{{#set: ec number=EC-6.1.1.19}}
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{{#set: gene associated=Tiso_gene_16360|Tiso_gene_12997}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:58, 21 March 2018

Gene Tiso_gene_9179

  • right end position:
    • 3240
  • transcription direction:
    • POSITIVE
  • left end position:
    • 631
  • centisome position:
    • 6.621891
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9179&oldid=45024"