Difference between revisions of "RXN-11109"

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(Created page with "Category:Gene == Gene Tiso_gene_12535 == * left end position: ** 3578 * transcription direction: ** POSITIVE * right end position: ** 6667 * centisome position: ** 51.7575...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** atp-dependent_rna_helicase_...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_12535 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
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* left end position:
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* direction:
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** 3578
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** atp-dependent_rna_helicase_ded1
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* right end position:
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** rna_helicase
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** 6667
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** dead_box_rna_helicase
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* centisome position:
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** ORF
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** 51.757557   
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** dead_box_helicase
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** atp-dependent_rna_helicase-like_protein_db10
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* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[4.3.1.17-RXN]]
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* With identifiers:
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** [[pantograph]]-[[synechocystis]]
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** 1 [[Wound-RNA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Unwound-RNA]][c] '''+''' 1 [[PROTON]][c]
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** [[pantograph]]-[[creinhardtii]]
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* With common name(s):
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* [[RXN-15122]]
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** 1 wound RNA[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an unwound RNA[c] '''+''' 1 H+[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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** experimental_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***ec-number
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* Gene: [[Tiso_gene_13862]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[THREDEHYD-RXN]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** experimental_annotation
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* Gene: [[Tiso_gene_15465]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_11551]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_5272]]
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== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY66-428]]
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*** Assignment: EC-NUMBER
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* [[ILEUSYN-PWY]]
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-5826]]
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*** Assignment: EC-NUMBER
−
* [[PWY-5437]]
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* Gene: [[Tiso_gene_17804]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9370]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_13864]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14774]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17819]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13863]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3578}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=atp-dependent_rna_helicase_ded1}}
−
{{#set: right end position=6667}}
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{{#set: common name=rna_helicase}}
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{{#set: centisome position=51.757557    }}
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{{#set: common name=dead_box_rna_helicase}}
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{{#set: reaction associated=4.3.1.17-RXN|RXN-15122|THREDEHYD-RXN}}
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{{#set: common name=ORF}}
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{{#set: pathway associated=PWY66-428|ILEUSYN-PWY|PWY-5826|PWY-5437}}
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{{#set: common name=dead_box_helicase}}
 +
{{#set: common name=atp-dependent_rna_helicase-like_protein_db10}}
 +
{{#set: ec number=EC-3.6.4.13}}
 +
{{#set: gene associated=Tiso_gene_13862|Tiso_gene_15465|Tiso_gene_11551|Tiso_gene_5272|Tiso_gene_17804|Tiso_gene_9370|Tiso_gene_13864|Tiso_gene_14774|Tiso_gene_17819|Tiso_gene_13863}}
 +
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:59, 21 March 2018

Reaction RXN-11109

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • atp-dependent_rna_helicase_ded1
    • rna_helicase
    • dead_box_rna_helicase
    • ORF
    • dead_box_helicase
    • atp-dependent_rna_helicase-like_protein_db10
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 wound RNA[c] + 1 ATP[c] + 1 H2O[c] => 1 phosphate[c] + 1 ADP[c] + 1 an unwound RNA[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11109&oldid=45128"