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| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN] == | + | == Gene Tiso_gene_11842 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 9843 |
| − | * ec number: | + | * transcription direction: |
| − | ** [http://enzyme.expasy.org/EC/2.1.1.104 EC-2.1.1.104] | + | ** POSITIVE |
| | + | * left end position: |
| | + | ** 7988 |
| | + | * centisome position: |
| | + | ** 54.347534 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * Reaction: [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]] |
| − | ** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CAFFEOYL-COA]][c] '''=>''' 1 [[FERULOYL-COA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
| + | ** Source: [[annotation-in-silico_annotation]] |
| − | * With common name(s):
| + | *** Assignment: ec-number |
| − | ** 1 S-adenosyl-L-methionine[c] '''+''' 1 trans-caffeoyl-CoA[c] '''=>''' 1 feruloyl-CoA[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c]
| + | == Pathways associated == |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_10561]] | + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_14561]]
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-6792]], scopoletin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6792 PWY-6792]
| + | |
| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | * [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
| + | |
| − | ** '''9''' reactions found over '''19''' reactions in the full pathway
| + | |
| − | * [[PWY-5710]], capsaicin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5710 PWY-5710]
| + | |
| − | ** '''1''' reactions found over '''6''' reactions in the full pathway | + | |
| − | * [[PWY-7498]], phenylpropanoids methylation (ice plant): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7498 PWY-7498]
| + | |
| − | ** '''2''' reactions found over '''10''' reactions in the full pathway
| + | |
| − | * [[PWY-6039]], chlorogenic acid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6039 PWY-6039]
| + | |
| − | ** '''1''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
| + | |
| − | ** '''3''' reactions found over '''13''' reactions in the full pathway | + | |
| − | * [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361] | + | |
| − | ** '''7''' reactions found over '''15''' reactions in the full pathway
| + | |
| − | == Reconstruction information == | + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[athaliana]]
| + | |
| − | *** [[esiliculosus]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=9843}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16925 16925]
| + | {{#set: transcription direction=POSITIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=7988}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01942 R01942]
| + | {{#set: centisome position=54.347534 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/P28034 P28034]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O65307 O65307]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q42945 Q42945]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24144 O24144]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24149 O24149]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24150 O24150]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O24151 O24151]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O04899 O04899]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O49499 O49499]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9SVI7 Q9SVI7]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q40313 Q40313]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q43095 Q43095]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O04854 O04854]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O65162 O65162]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O65362 O65362]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: ec number=EC-2.1.1.104}} | + | |
| − | {{#set: gene associated=Tiso_gene_10561|Tiso_gene_14561}} | + | |
| − | {{#set: in pathway=PWY-6792|PWY-1121|PWY-5710|PWY-7498|PWY-6039|PWY-7398|PWY-361}} | + | |
| − | {{#set: reconstruction category=orthology}} | + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=athaliana|esiliculosus}}
| + | |
