Difference between revisions of "Tiso gene 19590"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-OXOPROLINASE-ATP-HYDROLYSING-RXN 5-OXOPROLINASE-ATP-HYDROLYSING-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Gene == Gene Tiso_gene_19590 == * right end position: ** 2169 * transcription direction: ** POSITIVE * left end position: ** 25 * centisome position: ** 1.1379154...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-OXOPROLINASE-ATP-HYDROLYSING-RXN 5-OXOPROLINASE-ATP-HYDROLYSING-RXN] ==
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== Gene Tiso_gene_19590 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2169
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* common name:
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* transcription direction:
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** 5-oxoprolinase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.5.2.9 EC-3.5.2.9]
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** 25
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* centisome position:
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** 1.1379154   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
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** 1 [[5-OXOPROLINE]][c] '''+''' 1 [[ATP]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[Pi]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 5-oxo-L-proline[c] '''+''' 1 ATP[c] '''+''' 2 H2O[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 L-glutamate[c] '''+''' 1 phosphate[c]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-9952]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_3358]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***AUTOMATED-NAME-MATCH
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* [[VALDEG-PWY]]
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* [[Tiso_gene_3359]]
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* [[OXIDATIVEPENT-PWY]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-4041]], γ-glutamyl cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4041 PWY-4041]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2169}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10348 10348]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=25}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00251 R00251]
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{{#set: centisome position=1.1379154    }}
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* UNIPROT:
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{{#set: reaction associated=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN|RXN-9952}}
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** [http://www.uniprot.org/uniprot/P97608 P97608]
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{{#set: pathway associated=VALDEG-PWY|OXIDATIVEPENT-PWY}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=5-oxoprolinase}}
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{{#set: ec number=EC-3.5.2.9}}
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{{#set: gene associated=Tiso_gene_3358|Tiso_gene_3359}}
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{{#set: in pathway=PWY-4041}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:01, 21 March 2018

Gene Tiso_gene_19590

  • right end position:
    • 2169
  • transcription direction:
    • POSITIVE
  • left end position:
    • 25
  • centisome position:
    • 1.1379154
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19590&oldid=45307"