Difference between revisions of "Tiso gene 12280"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1121 RXN-1121] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With id...")
(Created page with "Category:Gene == Gene Tiso_gene_12280 == * right end position: ** 3075 * transcription direction: ** POSITIVE * left end position: ** 25 * centisome position: ** 0.3482379...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1121 RXN-1121] ==
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== Gene Tiso_gene_12280 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3075
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* transcription direction:
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** POSITIVE
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* left end position:
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** 25
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* centisome position:
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** 0.34823793   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GUANINE-DEAMINASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[5-HYDROXY-FERULIC-ACID]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 oxygen[c] '''+''' 1 ferulate[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 5-hydroxyferulate[c] '''+''' 1 H2O[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-15261]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_11183]]
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== Pathways associated ==
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** [[pantograph]]-[[athaliana]]
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* [[P164-PWY]]
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* [[Tiso_gene_8263]]
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* [[PWY-6608]]
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** [[pantograph]]-[[athaliana]]
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* [[PWY-7442]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5497]]
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* [[Tiso_gene_1547]]
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* [[PWY-6606]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_17028]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_3577]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=3075}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07440 R07440]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=25}}
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{{#set: gene associated=Tiso_gene_11183|Tiso_gene_8263|Tiso_gene_1547|Tiso_gene_17028|Tiso_gene_3577}}
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{{#set: centisome position=0.34823793    }}
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{{#set: in pathway=PWY-2181}}
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{{#set: reaction associated=GUANINE-DEAMINASE-RXN|RXN-15261}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=P164-PWY|PWY-6608|PWY-7442|PWY-5497|PWY-6606}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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Latest revision as of 21:02, 21 March 2018

Gene Tiso_gene_12280

  • right end position:
    • 3075
  • transcription direction:
    • POSITIVE
  • left end position:
    • 25
  • centisome position:
    • 0.34823793
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12280&oldid=45391"