Difference between revisions of "Tiso gene 5939"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12200 RXN-12200] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
(Created page with "Category:Gene == Gene Tiso_gene_5939 == * right end position: ** 12287 * transcription direction: ** NEGATIVE * left end position: ** 9686 * centisome position: ** 76.0342...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12200 RXN-12200] ==
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== Gene Tiso_gene_5939 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 12287
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.6.1.5 EC-3.6.1.5]
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** 9686
 +
* centisome position:
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** 76.034225   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.3.1.41-RXN]]
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** 1 [[CTP]][c] '''+''' 2 [[WATER]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CMP]][c] '''+''' 2 [[Pi]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 CTP[c] '''+''' 2 H2O[c] '''=>''' 2 H+[c] '''+''' 1 CMP[c] '''+''' 2 phosphate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_12899]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[3-OXOACYL-ACP-SYNTH-RXN]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_20236]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
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* Reaction: [[RXN-10059]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-7177]], UTP and CTP dephosphorylation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7177 PWY-7177]
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*** Assignment: ec-number
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* [[orthology]]:
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* Reaction: [[RXN-10654]]
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** [[pantograph]]:
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** Source: [[annotation-in-silico_annotation]]
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*** [[esiliculosus]]
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*** Assignment: ec-number
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* [[manual]]:
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** Source: [[annotation-experimental_annotation]]
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** [[primary_network]]
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*** Assignment: ec-number
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* [[annotation]]:
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* Reaction: [[RXN-10658]]
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** [[pathwaytools]]:
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** Source: [[annotation-in-silico_annotation]]
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*** [[experimental_annotation]]
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*** Assignment: ec-number
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*** [[in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-11474]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN-11479]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16615]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16621]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16625]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16629]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9516]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN-9523]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-9527]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9531]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9535]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9539]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9632]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9648]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9650]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9651]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9652]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN-9653]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9654]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN0-2141]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN1G-368]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN1G-445]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN1G-460]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN1G-499]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN3O-1803]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
 +
== Pathways associated ==
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* [[PWY-6113]]
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* [[FASYN-ELONG-PWY]]
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* [[PWY-6519]]
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* [[PWY-7388]]
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* [[PWY-5994]]
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* [[PWY-5971]]
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* [[PWY-6282]]
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* [[PWY-5965]]
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* [[PWY-5989]]
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* [[PWY-5966]]
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* [[PWYG-321]]
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* [[FASYN-INITIAL-PWY]]
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* [[PWY-7663]]
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* [[PWY-7664]]
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* [[PWY3O-355]]
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* [[PWY0-862]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=12287}}
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{{#set: common name=ORF}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: ec number=EC-3.6.1.5}}
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{{#set: left end position=9686}}
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{{#set: gene associated=Tiso_gene_12899|Tiso_gene_20236}}
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{{#set: centisome position=76.034225    }}
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{{#set: in pathway=PWY-7185|PWY-7177}}
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{{#set: reaction associated=2.3.1.41-RXN|3-OXOACYL-ACP-SYNTH-BASE-RXN|3-OXOACYL-ACP-SYNTH-RXN|RXN-10059|RXN-10654|RXN-10658|RXN-11474|RXN-11479|RXN-16615|RXN-16621|RXN-16625|RXN-16629|RXN-9516|RXN-9523|RXN-9527|RXN-9531|RXN-9535|RXN-9539|RXN-9632|RXN-9648|RXN-9650|RXN-9651|RXN-9652|RXN-9653|RXN-9654|RXN0-2141|RXN1G-368|RXN1G-445|RXN1G-460|RXN1G-499|RXN3O-1803}}
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{{#set: reconstruction category=orthology}}
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{{#set: pathway associated=PWY-6113|FASYN-ELONG-PWY|PWY-6519|PWY-7388|PWY-5994|PWY-5971|PWY-6282|PWY-5965|PWY-5989|PWY-5966|PWYG-321|FASYN-INITIAL-PWY|PWY-7663|PWY-7664|PWY3O-355|PWY0-862}}
−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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−
{{#set: reconstruction category=manual}}
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−
{{#set: reconstruction source=primary_network}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:02, 21 March 2018

Gene Tiso_gene_5939

  • right end position:
    • 12287
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 9686
  • centisome position:
    • 76.034225
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5939&oldid=45412"