Difference between revisions of "Tiso gene 7800"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] == * direction: **...")
(Created page with "Category:Gene == Gene Tiso_gene_7800 == * right end position: ** 9172 * transcription direction: ** POSITIVE * left end position: ** 8299 * centisome position: ** 76.82837...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] ==
+
== Gene Tiso_gene_7800 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 9172
−
* common name:
+
* transcription direction:
−
** 4-hydroxyphenylpyruvate_dioxygenase
+
** POSITIVE
−
** ORF
+
* left end position:
−
* ec number:
+
** 8299
−
** [http://enzyme.expasy.org/EC/1.13.11.27 EC-1.13.11.27]
+
* centisome position:
 +
** 76.82837   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ALDEHYDE-REDUCTASE-RXN]]
−
** 1 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HOMOGENTISATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 4-hydroxyphenylpyruvate[c] '''+''' 1 oxygen[c] '''=>''' 1 homogentisate[c] '''+''' 1 CO2[c]
+
* Reaction: [[RXN-12078]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: automated-name-match
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN-14102]]
−
* [[Tiso_gene_18977]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: automated-name-match
−
***EC-NUMBER
+
* Reaction: [[RXN-8772]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: automated-name-match
−
** [[pantograph]]-[[esiliculosus]]
+
* Reaction: [[RXN-8773]]
−
* [[Tiso_gene_18328]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: automated-name-match
−
***EC-NUMBER
+
== Pathways associated ==
−
** [[pantograph]]-[[athaliana]]
+
* [[PWY-5515]]
−
** [[pantograph]]-[[synechocystis]]
+
* [[PWY-5516]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[PWY-6693]]
−
* [[Tiso_gene_18976]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-1581]], plastoquinol-9 biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1581 PWY-1581]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7432 PWY-7432]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
+
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[synechocystis]]
+
−
*** [[esiliculosus]]
+
−
*** [[athaliana]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=9172}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16189 16189]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=8299}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02521 R02521]
+
{{#set: centisome position=76.82837    }}
−
* UNIPROT:
+
{{#set: reaction associated=ALDEHYDE-REDUCTASE-RXN|RXN-12078|RXN-14102|RXN-8772|RXN-8773}}
−
** [http://www.uniprot.org/uniprot/P32754 P32754]
+
{{#set: pathway associated=PWY-5515|PWY-5516|PWY-6693}}
−
** [http://www.uniprot.org/uniprot/Q02110 Q02110]
+
−
** [http://www.uniprot.org/uniprot/P32755 P32755]
+
−
** [http://www.uniprot.org/uniprot/O48604 O48604]
+
−
** [http://www.uniprot.org/uniprot/O23920 O23920]
+
−
** [http://www.uniprot.org/uniprot/P93836 P93836]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=4-hydroxyphenylpyruvate_dioxygenase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.13.11.27}}
+
−
{{#set: gene associated=Tiso_gene_18977|Tiso_gene_18328|Tiso_gene_18976}}
+
−
{{#set: in pathway=PWY-1581|PWY-7432|TYRFUMCAT-PWY|PWY-1422}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:02, 21 March 2018

Gene Tiso_gene_7800

  • right end position:
    • 9172
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8299
  • centisome position:
    • 76.82837
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7800&oldid=45457"