Difference between revisions of "Tiso gene 7800"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] == * direction: **...")
(Created page with "Category:Gene == Gene Tiso_gene_7800 == * right end position: ** 9172 * transcription direction: ** POSITIVE * left end position: ** 8299 * centisome position: ** 76.82837...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN 4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN] ==
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== Gene Tiso_gene_7800 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9172
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* common name:
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* transcription direction:
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** 4-hydroxyphenylpyruvate_dioxygenase
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** POSITIVE
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** ORF
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* left end position:
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* ec number:
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** 8299
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** [http://enzyme.expasy.org/EC/1.13.11.27 EC-1.13.11.27]
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* centisome position:
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** 76.82837   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ALDEHYDE-REDUCTASE-RXN]]
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** 1 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HOMOGENTISATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 4-hydroxyphenylpyruvate[c] '''+''' 1 oxygen[c] '''=>''' 1 homogentisate[c] '''+''' 1 CO2[c]
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* Reaction: [[RXN-12078]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14102]]
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* [[Tiso_gene_18977]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-8772]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-8773]]
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* [[Tiso_gene_18328]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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== Pathways associated ==
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** [[pantograph]]-[[athaliana]]
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* [[PWY-5515]]
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** [[pantograph]]-[[synechocystis]]
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* [[PWY-5516]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6693]]
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* [[Tiso_gene_18976]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-1581]], plastoquinol-9 biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1581 PWY-1581]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7432 PWY-7432]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9172}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16189 16189]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=8299}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02521 R02521]
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{{#set: centisome position=76.82837    }}
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* UNIPROT:
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{{#set: reaction associated=ALDEHYDE-REDUCTASE-RXN|RXN-12078|RXN-14102|RXN-8772|RXN-8773}}
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** [http://www.uniprot.org/uniprot/P32754 P32754]
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{{#set: pathway associated=PWY-5515|PWY-5516|PWY-6693}}
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** [http://www.uniprot.org/uniprot/Q02110 Q02110]
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** [http://www.uniprot.org/uniprot/P32755 P32755]
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** [http://www.uniprot.org/uniprot/O48604 O48604]
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** [http://www.uniprot.org/uniprot/O23920 O23920]
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** [http://www.uniprot.org/uniprot/P93836 P93836]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=4-hydroxyphenylpyruvate_dioxygenase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.13.11.27}}
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{{#set: gene associated=Tiso_gene_18977|Tiso_gene_18328|Tiso_gene_18976}}
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{{#set: in pathway=PWY-1581|PWY-7432|TYRFUMCAT-PWY|PWY-1422}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 21:02, 21 March 2018

Gene Tiso_gene_7800

  • right end position:
    • 9172
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8299
  • centisome position:
    • 76.82837
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7800&oldid=45457"