Difference between revisions of "DUTP-PYROP-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_2224 == * left end position: ** 1789 * transcription direction: ** NEGATIVE * right end position: ** 3659 * centisome position: ** 8.914246...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** inosine_triphosph...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_2224 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DUTP-PYROP-RXN DUTP-PYROP-RXN] ==
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* left end position:
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* direction:
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** 1789
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** inosine_triphosphate
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* right end position:
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* ec number:
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** 3659
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** [http://enzyme.expasy.org/EC/3.6.1.23 EC-3.6.1.23]
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* centisome position:
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** [http://enzyme.expasy.org/EC/3.6.1.9 EC-3.6.1.9]
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** 8.914246   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DUMP]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 dUTP[c] '''+''' 1 H2O[c] '''=>''' 1 diphosphate[c] '''+''' 1 H+[c] '''+''' 1 dUMP[c]
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***ec-number
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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* [[HICH]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_18793]]
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* [[RXN-13721]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[orthology-athaliana]]
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** experimental_annotation
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* Gene: [[Tiso_gene_18792]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-6384]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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== Pathways  ==
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***ec-number
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* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7206 PWY-7206]
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** experimental_annotation
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** '''2''' reactions found over '''3''' reactions in the full pathway
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***ec-number
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
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== Pathways associated ==
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7574]]
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
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* [[VALDEG-PWY]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-3941]]
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** '''12''' reactions found over '''17''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1789}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10248 10248]
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{{#set: right end position=3659}}
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* LIGAND-RXN:
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{{#set: centisome position=8.914246    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
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{{#set: reaction associated=3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN|HICH|RXN-13721|RXN-6384}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7574|VALDEG-PWY|PWY-3941}}
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** [http://www.uniprot.org/uniprot/Q89932 Q89932]
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** [http://www.uniprot.org/uniprot/P33316 P33316]
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** [http://www.uniprot.org/uniprot/O15923 O15923]
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** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
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** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
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** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
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** [http://www.uniprot.org/uniprot/P43792 P43792]
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** [http://www.uniprot.org/uniprot/P32518 P32518]
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** [http://www.uniprot.org/uniprot/P68635 P68635]
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** [http://www.uniprot.org/uniprot/P68634 P68634]
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** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
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** [http://www.uniprot.org/uniprot/P03195 P03195]
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** [http://www.uniprot.org/uniprot/Q89662 Q89662]
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** [http://www.uniprot.org/uniprot/Q00030 Q00030]
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** [http://www.uniprot.org/uniprot/P33317 P33317]
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** [http://www.uniprot.org/uniprot/Q45920 Q45920]
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** [http://www.uniprot.org/uniprot/P43058 P43058]
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** [http://www.uniprot.org/uniprot/O80091 O80091]
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** [http://www.uniprot.org/uniprot/O36404 O36404]
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** [http://www.uniprot.org/uniprot/O41033 O41033]
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** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
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** [http://www.uniprot.org/uniprot/O39251 O39251]
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** [http://www.uniprot.org/uniprot/O01934 O01934]
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** [http://www.uniprot.org/uniprot/P10234 P10234]
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** [http://www.uniprot.org/uniprot/P06968 P06968]
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** [http://www.uniprot.org/uniprot/P09254 P09254]
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** [http://www.uniprot.org/uniprot/P28892 P28892]
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** [http://www.uniprot.org/uniprot/P28893 P28893]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=inosine_triphosphate}}
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{{#set: ec number=EC-3.6.1.23}}
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{{#set: ec number=EC-3.6.1.9}}
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{{#set: gene associated=Tiso_gene_18793|Tiso_gene_18792}}
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{{#set: in pathway=PWY-7206|PWY-7184|PWY-7187|PWY-6545|PWY0-166}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-athaliana}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction DUTP-PYROP-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • inosine_triphosphate
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dUTP[c] + 1 H2O[c] => 1 diphosphate[c] + 1 H+[c] + 1 dUMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7206, pyrimidine deoxyribonucleotides dephosphorylation: PWY-7206
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway

Reconstruction information

External links





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