Difference between revisions of "KDOTRANS2-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12376 RXN-12376] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_(guanine_-n1)-methyltr...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS2-RXN KDOTRANS2-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12376 RXN-12376] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS2-RXN KDOTRANS2-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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* common name:
 
−
** trna_(guanine_-n1)-methyltransferase
 
−
** probable_trna_(guanine_-n_)-dimethyltransferase_1
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.216 EC-2.1.1.216]
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** [http://enzyme.expasy.org/EC/2.4.99.13 EC-2.4.99.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[tRNA-Containing-N2-Methylguanine-26]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[tRNA-Containing-N2-dimethylguanine-26]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
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** 1 [[KDO-LIPID-IVA]][c] '''+''' 1 [[CMP-KDO]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[KDO2-LIPID-IVA]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
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** 1 an N2-methylguanine26 in tRNA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 an N2dimethylguanine26 in tRNA[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
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** 1 α-Kdo-(2→6)-lipid IVA[c] '''+''' 1 CMP-3-deoxy-β-D-manno-octulosonate[c] '''=>''' 1 CMP[c] '''+''' 1 α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16307]]
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* Gene: [[Tiso_gene_14463]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-athaliana]]
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***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_9360]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829]
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* [[KDOSYN-PWY]], Kdo transfer to lipid IVA I: [http://metacyc.org/META/NEW-IMAGE?object=KDOSYN-PWY KDOSYN-PWY]
−
** '''3''' reactions found over '''15''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28062 28062]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05074 R05074]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=trna_(guanine_-n1)-methyltransferase}}
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{{#set: ec number=EC-2.4.99.13}}
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{{#set: common name=probable_trna_(guanine_-n_)-dimethyltransferase_1}}
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{{#set: gene associated=Tiso_gene_14463}}
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{{#set: ec number=EC-2.1.1.216}}
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{{#set: in pathway=KDOSYN-PWY}}
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{{#set: gene associated=Tiso_gene_16307|Tiso_gene_9360}}
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{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY-6829}}
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{{#set: reconstruction source=orthology-athaliana}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:03, 21 March 2018

Reaction KDOTRANS2-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 α-Kdo-(2→6)-lipid IVA[c] + 1 CMP-3-deoxy-β-D-manno-octulosonate[c] => 1 CMP[c] + 1 α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IVA[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • KDOSYN-PWY, Kdo transfer to lipid IVA I: KDOSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




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